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Cluster: HRGMv2_2615_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2615_1 HRGMv2_2615_1_116 128170 130755 + 3.A.12.1.1
CAZyme HRGMv2_2615_1 HRGMv2_2615_1_117 130914 132044 + GH88
TC HRGMv2_2615_1 HRGMv2_2615_1_118 132116 133048 + 8.A.5.1.7
TC HRGMv2_2615_1 HRGMv2_2615_1_119 133117 134493 + 2.A.22.5.3
TF HRGMv2_2615_1 HRGMv2_2615_1_120 134581 134820 - SpoVT_AbrB
pfam HRGMv2_2615_1 HRGMv2_2615_1_121 135353 136744 + tRNA-synt_2b | HGTP_anticodon
TC HRGMv2_2615_1 HRGMv2_2615_1_122 136865 138151 + 2.A.6.4.2
TC HRGMv2_2615_1 HRGMv2_2615_1_123 138155 139069 + 2.A.6.4.3
Gene ID: HRGMv2_2615_1_116
Type: TC
Location: 128170 - 130755 (+)
Gene ID: HRGMv2_2615_1_117
Type: CAZyme
Location: 130914 - 132044 (+)
Gene ID: HRGMv2_2615_1_118
Type: TC
Location: 132116 - 133048 (+)
Gene ID: HRGMv2_2615_1_119
Type: TC
Location: 133117 - 134493 (+)
Gene ID: HRGMv2_2615_1_120
Type: TF
Location: 134581 - 134820 (-)
Gene ID: HRGMv2_2615_1_121
Type: pfam
Location: 135353 - 136744 (+)
Gene ID: HRGMv2_2615_1_122
Type: TC
Location: 136865 - 138151 (+)
Gene ID: HRGMv2_2615_1_123
Type: TC
Location: 138155 - 139069 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
UBA1381
→
Family
UMGS1253
→
Genus
Aphodoplasma
→
Species
Aphodoplasma sp900550065

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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