Cluster: HRGMv2_2585_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2585
- CGC Family ID: CGCFAM_00450
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2585_3 | HRGMv2_2585_3_138 | 165580 | 166362 | + | 3.A.1.103.1 |
| TC | HRGMv2_2585_3 | HRGMv2_2585_3_139 | 166444 | 167190 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_2585_3 | HRGMv2_2585_3_140 | 167421 | 168371 | + | GT2 |
| CAZyme | HRGMv2_2585_3 | HRGMv2_2585_3_141 | 168398 | 169258 | + | GT2 |
| TC | HRGMv2_2585_3 | HRGMv2_2585_3_142 | 169446 | 170843 | + | 9.B.18.1.3 |
Gene ID: HRGMv2_2585_3_138
Type: TC
Location: 165580 - 166362 (+)
Type: TC
Location: 165580 - 166362 (+)
Gene ID: HRGMv2_2585_3_139
Type: TC
Location: 166444 - 167190 (+)
Type: TC
Location: 166444 - 167190 (+)
Gene ID: HRGMv2_2585_3_140
Type: CAZyme
Location: 167421 - 168371 (+)
Type: CAZyme
Location: 167421 - 168371 (+)
Gene ID: HRGMv2_2585_3_141
Type: CAZyme
Location: 168398 - 169258 (+)
Type: CAZyme
Location: 168398 - 169258 (+)
Gene ID: HRGMv2_2585_3_142
Type: TC
Location: 169446 - 170843 (+)
Type: TC
Location: 169446 - 170843 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanosphaera
Species
Methanosphaera cuniculi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.