Cluster: HRGMv2_2585_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2585
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2585_2 | HRGMv2_2585_2_228 | 253511 | 254647 | + | GT1 |
| pfam | HRGMv2_2585_2 | HRGMv2_2585_2_229 | 254728 | 255468 | + | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| pfam | HRGMv2_2585_2 | HRGMv2_2585_2_230 | 255803 | 256075 | + | DUF6110 |
| TC | HRGMv2_2585_2 | HRGMv2_2585_2_231 | 256171 | 258285 | + | 3.A.3.32.6 |
| TC | HRGMv2_2585_2 | HRGMv2_2585_2_232 | 258714 | 260216 | - | 2.A.38.1.4 |
| TC | HRGMv2_2585_2 | HRGMv2_2585_2_233 | 260394 | 261890 | - | 2.A.38.1.4 |
Gene ID: HRGMv2_2585_2_228
Type: CAZyme
Location: 253511 - 254647 (+)
Type: CAZyme
Location: 253511 - 254647 (+)
Gene ID: HRGMv2_2585_2_229
Type: pfam
Location: 254728 - 255468 (+)
Type: pfam
Location: 254728 - 255468 (+)
Gene ID: HRGMv2_2585_2_230
Type: pfam
Location: 255803 - 256075 (+)
Type: pfam
Location: 255803 - 256075 (+)
Gene ID: HRGMv2_2585_2_231
Type: TC
Location: 256171 - 258285 (+)
Type: TC
Location: 256171 - 258285 (+)
Gene ID: HRGMv2_2585_2_232
Type: TC
Location: 258714 - 260216 (-)
Type: TC
Location: 258714 - 260216 (-)
Gene ID: HRGMv2_2585_2_233
Type: TC
Location: 260394 - 261890 (-)
Type: TC
Location: 260394 - 261890 (-)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanosphaera
Species
Methanosphaera cuniculi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.