Cluster: HRGMv2_2584_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2584
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_17 | 15800 | 17200 | + | GT2 |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_18 | 17294 | 18334 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2584_9 | HRGMv2_2584_9_19 | 18582 | 18908 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2584_9 | HRGMv2_2584_9_20 | 18913 | 19179 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_21 | 19280 | 20785 | + | GT4 |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_22 | 21038 | 22066 | + | GT2 |
| pfam | HRGMv2_2584_9 | HRGMv2_2584_9_23 | 22104 | 23633 | + | DUF2142 |
| TC | HRGMv2_2584_9 | HRGMv2_2584_9_24 | 23707 | 24492 | + | 3.A.1.103.4 |
| TC | HRGMv2_2584_9 | HRGMv2_2584_9_25 | 24501 | 26252 | + | 3.A.1.103.1 |
| pfam | HRGMv2_2584_9 | HRGMv2_2584_9_26 | 26255 | 27316 | + | Glyphos_transf |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_27 | 27325 | 28293 | + | GT2 |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_28 | 28293 | 29249 | + | GT2 |
| CAZyme | HRGMv2_2584_9 | HRGMv2_2584_9_29 | 29254 | 30108 | + | GT2 |
| TC | HRGMv2_2584_9 | HRGMv2_2584_9_30 | 30149 | 31552 | + | 9.B.18.1.1 |
Gene ID: HRGMv2_2584_9_17
Type: CAZyme
Location: 15800 - 17200 (+)
Type: CAZyme
Location: 15800 - 17200 (+)
Gene ID: HRGMv2_2584_9_18
Type: CAZyme
Location: 17294 - 18334 (+)
Type: CAZyme
Location: 17294 - 18334 (+)
Gene ID: HRGMv2_2584_9_19
Type:
Location: 18582 - 18908 (+)
Type:
Location: 18582 - 18908 (+)
Gene ID: HRGMv2_2584_9_20
Type:
Location: 18913 - 19179 (+)
Type:
Location: 18913 - 19179 (+)
Gene ID: HRGMv2_2584_9_21
Type: CAZyme
Location: 19280 - 20785 (+)
Type: CAZyme
Location: 19280 - 20785 (+)
Gene ID: HRGMv2_2584_9_22
Type: CAZyme
Location: 21038 - 22066 (+)
Type: CAZyme
Location: 21038 - 22066 (+)
Gene ID: HRGMv2_2584_9_23
Type: pfam
Location: 22104 - 23633 (+)
Type: pfam
Location: 22104 - 23633 (+)
Gene ID: HRGMv2_2584_9_24
Type: TC
Location: 23707 - 24492 (+)
Type: TC
Location: 23707 - 24492 (+)
Gene ID: HRGMv2_2584_9_25
Type: TC
Location: 24501 - 26252 (+)
Type: TC
Location: 24501 - 26252 (+)
Gene ID: HRGMv2_2584_9_26
Type: pfam
Location: 26255 - 27316 (+)
Type: pfam
Location: 26255 - 27316 (+)
Gene ID: HRGMv2_2584_9_27
Type: CAZyme
Location: 27325 - 28293 (+)
Type: CAZyme
Location: 27325 - 28293 (+)
Gene ID: HRGMv2_2584_9_28
Type: CAZyme
Location: 28293 - 29249 (+)
Type: CAZyme
Location: 28293 - 29249 (+)
Gene ID: HRGMv2_2584_9_29
Type: CAZyme
Location: 29254 - 30108 (+)
Type: CAZyme
Location: 29254 - 30108 (+)
Gene ID: HRGMv2_2584_9_30
Type: TC
Location: 30149 - 31552 (+)
Type: TC
Location: 30149 - 31552 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A sp900766745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.