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Cluster: HRGMv2_2580_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2580_32 HRGMv2_2580_32_5 3392 4603 + 3.A.1.103.4
CAZyme HRGMv2_2580_32 HRGMv2_2580_32_6 4671 7661 + GT2
CAZyme HRGMv2_2580_32 HRGMv2_2580_32_7 7661 8929 + GT4
peptidase HRGMv2_2580_32 HRGMv2_2580_32_8 8991 11780 - C82.UNA
CAZyme HRGMv2_2580_32 HRGMv2_2580_32_9 12069 14543 + GH25
pfam HRGMv2_2580_32 HRGMv2_2580_32_10 14695 16164 + YceG
pfam HRGMv2_2580_32 HRGMv2_2580_32_11 16444 16923 + GreA_GreB | GreA_GreB_N
TC HRGMv2_2580_32 HRGMv2_2580_32_12 17197 17922 + 9.B.116.1.1
STP HRGMv2_2580_32 HRGMv2_2580_32_13 17919 19007 + HATPase_c
TF HRGMv2_2580_32 HRGMv2_2580_32_14 19065 19694 + GerE
TC HRGMv2_2580_32 HRGMv2_2580_32_15 19812 20477 + 2.A.38.4.4
NULL(UNKNOWN) HRGMv2_2580_32 HRGMv2_2580_32_16 20491 20784 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2580_32 HRGMv2_2580_32_17 20909 21865 + GT2
Gene ID: HRGMv2_2580_32_5
Type: TC
Location: 3392 - 4603 (+)
Gene ID: HRGMv2_2580_32_6
Type: CAZyme
Location: 4671 - 7661 (+)
Gene ID: HRGMv2_2580_32_7
Type: CAZyme
Location: 7661 - 8929 (+)
Gene ID: HRGMv2_2580_32_8
Type: peptidase
Location: 8991 - 11780 (-)
Gene ID: HRGMv2_2580_32_9
Type: CAZyme
Location: 12069 - 14543 (+)
Gene ID: HRGMv2_2580_32_10
Type: pfam
Location: 14695 - 16164 (+)
Gene ID: HRGMv2_2580_32_11
Type: pfam
Location: 16444 - 16923 (+)
Gene ID: HRGMv2_2580_32_12
Type: TC
Location: 17197 - 17922 (+)
Gene ID: HRGMv2_2580_32_13
Type: STP
Location: 17919 - 19007 (+)
Gene ID: HRGMv2_2580_32_14
Type: TF
Location: 19065 - 19694 (+)
Gene ID: HRGMv2_2580_32_15
Type: TC
Location: 19812 - 20477 (+)
Gene ID: HRGMv2_2580_32_16
Type:
Location: 20491 - 20784 (+)
Gene ID: HRGMv2_2580_32_17
Type: CAZyme
Location: 20909 - 21865 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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