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Cluster: HRGMv2_2580_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2580_14 HRGMv2_2580_14_40 42941 44698 + 3.A.1.106.8
TC HRGMv2_2580_14 HRGMv2_2580_14_41 44698 46479 + 3.A.1.106.8
pfam HRGMv2_2580_14 HRGMv2_2580_14_42 46997 47839 + PRD | PRD | CAT_RBD
TC HRGMv2_2580_14 HRGMv2_2580_14_43 47932 49830 + 4.A.1.2.6
TF HRGMv2_2580_14 HRGMv2_2580_14_44 50133 51050 - HTH_6
CAZyme HRGMv2_2580_14 HRGMv2_2580_14_45 51377 52765 + GH4
pfam HRGMv2_2580_14 HRGMv2_2580_14_46 52775 53605 + Hydrolase_3
CAZyme HRGMv2_2580_14 HRGMv2_2580_14_47 53663 55096 + GH1
CAZyme HRGMv2_2580_14 HRGMv2_2580_14_48 55167 56630 + GH1
TC HRGMv2_2580_14 HRGMv2_2580_14_49 56872 57816 + 3.A.1.1.10
TC HRGMv2_2580_14 HRGMv2_2580_14_50 57830 58753 + 3.A.1.1.29
STP HRGMv2_2580_14 HRGMv2_2580_14_51 58882 60348 + SBP_bac_1
pfam HRGMv2_2580_14 HRGMv2_2580_14_52 60453 61058 + DUF624
TC HRGMv2_2580_14 HRGMv2_2580_14_53 61060 62793 + 8.A.59.2.1
TF HRGMv2_2580_14 HRGMv2_2580_14_54 62786 64279 + HTH_AraC | HTH_AraC
TC HRGMv2_2580_14 HRGMv2_2580_14_55 64615 66009 - 2.A.66.1.28
Gene ID: HRGMv2_2580_14_40
Type: TC
Location: 42941 - 44698 (+)
Gene ID: HRGMv2_2580_14_41
Type: TC
Location: 44698 - 46479 (+)
Gene ID: HRGMv2_2580_14_42
Type: pfam
Location: 46997 - 47839 (+)
Gene ID: HRGMv2_2580_14_43
Type: TC
Location: 47932 - 49830 (+)
Gene ID: HRGMv2_2580_14_44
Type: TF
Location: 50133 - 51050 (-)
Gene ID: HRGMv2_2580_14_45
Type: CAZyme
Location: 51377 - 52765 (+)
Gene ID: HRGMv2_2580_14_46
Type: pfam
Location: 52775 - 53605 (+)
Gene ID: HRGMv2_2580_14_47
Type: CAZyme
Location: 53663 - 55096 (+)
Gene ID: HRGMv2_2580_14_48
Type: CAZyme
Location: 55167 - 56630 (+)
Gene ID: HRGMv2_2580_14_49
Type: TC
Location: 56872 - 57816 (+)
Gene ID: HRGMv2_2580_14_50
Type: TC
Location: 57830 - 58753 (+)
Gene ID: HRGMv2_2580_14_51
Type: STP
Location: 58882 - 60348 (+)
Gene ID: HRGMv2_2580_14_52
Type: pfam
Location: 60453 - 61058 (+)
Gene ID: HRGMv2_2580_14_53
Type: TC
Location: 61060 - 62793 (+)
Gene ID: HRGMv2_2580_14_54
Type: TF
Location: 62786 - 64279 (+)
Gene ID: HRGMv2_2580_14_55
Type: TC
Location: 64615 - 66009 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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