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Cluster: HRGMv2_2580_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2580_7 HRGMv2_2580_7_47 50974 52416 - 2.A.66.2.16
CAZyme HRGMv2_2580_7 HRGMv2_2580_7_48 52432 53523 - GT2
CAZyme HRGMv2_2580_7 HRGMv2_2580_7_49 54398 55504 - GT4
pfam HRGMv2_2580_7 HRGMv2_2580_7_50 55762 56949 - Wzy_C
CAZyme HRGMv2_2580_7 HRGMv2_2580_7_51 56942 57994 - GT4
pfam HRGMv2_2580_7 HRGMv2_2580_7_52 57991 59115 - Epimerase_2
pfam HRGMv2_2580_7 HRGMv2_2580_7_53 59118 60227 - Epimerase | Polysacc_synt_2 | NAD_binding_4 | Polysacc_synt_C
TC HRGMv2_2580_7 HRGMv2_2580_7_54 60224 61246 - 9.B.18.2.1
CAZyme HRGMv2_2580_7 HRGMv2_2580_7_55 61250 62479 - GT4
pfam HRGMv2_2580_7 HRGMv2_2580_7_56 62476 63342 - 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
TC HRGMv2_2580_7 HRGMv2_2580_7_57 63339 63956 - 9.B.18.1.2
TC HRGMv2_2580_7 HRGMv2_2580_7_58 63966 65786 - 9.B.18.2.1
pfam HRGMv2_2580_7 HRGMv2_2580_7_59 65799 66563 - CpsB_CapC
TC HRGMv2_2580_7 HRGMv2_2580_7_60 66607 67314 - 8.A.3.2.1
TC HRGMv2_2580_7 HRGMv2_2580_7_61 67329 68111 - 8.A.3.2.4
Gene ID: HRGMv2_2580_7_47
Type: TC
Location: 50974 - 52416 (-)
Gene ID: HRGMv2_2580_7_48
Type: CAZyme
Location: 52432 - 53523 (-)
Gene ID: HRGMv2_2580_7_49
Type: CAZyme
Location: 54398 - 55504 (-)
Gene ID: HRGMv2_2580_7_50
Type: pfam
Location: 55762 - 56949 (-)
Gene ID: HRGMv2_2580_7_51
Type: CAZyme
Location: 56942 - 57994 (-)
Gene ID: HRGMv2_2580_7_52
Type: pfam
Location: 57991 - 59115 (-)
Gene ID: HRGMv2_2580_7_53
Type: pfam
Location: 59118 - 60227 (-)
Gene ID: HRGMv2_2580_7_54
Type: TC
Location: 60224 - 61246 (-)
Gene ID: HRGMv2_2580_7_55
Type: CAZyme
Location: 61250 - 62479 (-)
Gene ID: HRGMv2_2580_7_56
Type: pfam
Location: 62476 - 63342 (-)
Gene ID: HRGMv2_2580_7_57
Type: TC
Location: 63339 - 63956 (-)
Gene ID: HRGMv2_2580_7_58
Type: TC
Location: 63966 - 65786 (-)
Gene ID: HRGMv2_2580_7_59
Type: pfam
Location: 65799 - 66563 (-)
Gene ID: HRGMv2_2580_7_60
Type: TC
Location: 66607 - 67314 (-)
Gene ID: HRGMv2_2580_7_61
Type: TC
Location: 67329 - 68111 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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