Cluster: HRGMv2_2539_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2539
- CGC Family ID: CGCFAM_09177
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2539_2 | HRGMv2_2539_2_43 | 58117 | 58917 | + | 8.A.3.2.4 |
| TC | HRGMv2_2539_2 | HRGMv2_2539_2_44 | 58950 | 59711 | + | 8.A.3.2.1 |
| pfam | HRGMv2_2539_2 | HRGMv2_2539_2_45 | 59718 | 60485 | + | CpsB_CapC |
| TC | HRGMv2_2539_2 | HRGMv2_2539_2_46 | 60507 | 61223 | + | 9.B.18.1.2 |
| pfam | HRGMv2_2539_2 | HRGMv2_2539_2_47 | 61245 | 61694 | + | Alg14 |
| pfam | HRGMv2_2539_2 | HRGMv2_2539_2_48 | 61694 | 62182 | + | Glyco_tran_28_C |
| CAZyme | HRGMv2_2539_2 | HRGMv2_2539_2_49 | 62197 | 63075 | + | GT14 |
| CAZyme | HRGMv2_2539_2 | HRGMv2_2539_2_50 | 63062 | 64033 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2539_2 | HRGMv2_2539_2_51 | 64020 | 65249 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2539_2 | HRGMv2_2539_2_52 | 65230 | 66225 | + | GT2 |
| pfam | HRGMv2_2539_2 | HRGMv2_2539_2_53 | 66235 | 67401 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_2539_2 | HRGMv2_2539_2_54 | 67417 | 68361 | + | ATPgrasp_TupA |
| TC | HRGMv2_2539_2 | HRGMv2_2539_2_55 | 68386 | 69810 | + | 2.A.66.2.16 |
Gene ID: HRGMv2_2539_2_43
Type: TC
Location: 58117 - 58917 (+)
Type: TC
Location: 58117 - 58917 (+)
Gene ID: HRGMv2_2539_2_44
Type: TC
Location: 58950 - 59711 (+)
Type: TC
Location: 58950 - 59711 (+)
Gene ID: HRGMv2_2539_2_45
Type: pfam
Location: 59718 - 60485 (+)
Type: pfam
Location: 59718 - 60485 (+)
Gene ID: HRGMv2_2539_2_46
Type: TC
Location: 60507 - 61223 (+)
Type: TC
Location: 60507 - 61223 (+)
Gene ID: HRGMv2_2539_2_47
Type: pfam
Location: 61245 - 61694 (+)
Type: pfam
Location: 61245 - 61694 (+)
Gene ID: HRGMv2_2539_2_48
Type: pfam
Location: 61694 - 62182 (+)
Type: pfam
Location: 61694 - 62182 (+)
Gene ID: HRGMv2_2539_2_49
Type: CAZyme
Location: 62197 - 63075 (+)
Type: CAZyme
Location: 62197 - 63075 (+)
Gene ID: HRGMv2_2539_2_50
Type: CAZyme
Location: 63062 - 64033 (+)
Type: CAZyme
Location: 63062 - 64033 (+)
Gene ID: HRGMv2_2539_2_51
Type:
Location: 64020 - 65249 (+)
Type:
Location: 64020 - 65249 (+)
Gene ID: HRGMv2_2539_2_52
Type: CAZyme
Location: 65230 - 66225 (+)
Type: CAZyme
Location: 65230 - 66225 (+)
Gene ID: HRGMv2_2539_2_53
Type: pfam
Location: 66235 - 67401 (+)
Type: pfam
Location: 66235 - 67401 (+)
Gene ID: HRGMv2_2539_2_54
Type: pfam
Location: 67417 - 68361 (+)
Type: pfam
Location: 67417 - 68361 (+)
Gene ID: HRGMv2_2539_2_55
Type: TC
Location: 68386 - 69810 (+)
Type: TC
Location: 68386 - 69810 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.