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Cluster: HRGMv2_2539_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2539_2 HRGMv2_2539_2_26 32030 32641 + 2.A.88.5.2
TF HRGMv2_2539_2 HRGMv2_2539_2_27 32811 33515 + Trans_reg_C
CAZyme HRGMv2_2539_2 HRGMv2_2539_2_28 33652 34818 + GH3
pfam HRGMv2_2539_2 HRGMv2_2539_2_29 35262 36041 + AA_kinase
pfam HRGMv2_2539_2 HRGMv2_2539_2_30 36207 36887 + DUF969
TC HRGMv2_2539_2 HRGMv2_2539_2_31 36900 37844 + 9.B.211.1.2
peptidase HRGMv2_2539_2 HRGMv2_2539_2_32 37867 38511 + C15.UPW
TC HRGMv2_2539_2 HRGMv2_2539_2_33 38570 40327 - 3.A.1.135.5
TC HRGMv2_2539_2 HRGMv2_2539_2_34 40320 42047 - 3.A.1.135.5
Gene ID: HRGMv2_2539_2_26
Type: TC
Location: 32030 - 32641 (+)
Gene ID: HRGMv2_2539_2_27
Type: TF
Location: 32811 - 33515 (+)
Gene ID: HRGMv2_2539_2_28
Type: CAZyme
Location: 33652 - 34818 (+)
Gene ID: HRGMv2_2539_2_29
Type: pfam
Location: 35262 - 36041 (+)
Gene ID: HRGMv2_2539_2_30
Type: pfam
Location: 36207 - 36887 (+)
Gene ID: HRGMv2_2539_2_31
Type: TC
Location: 36900 - 37844 (+)
Gene ID: HRGMv2_2539_2_32
Type: peptidase
Location: 37867 - 38511 (+)
Gene ID: HRGMv2_2539_2_33
Type: TC
Location: 38570 - 40327 (-)
Gene ID: HRGMv2_2539_2_34
Type: TC
Location: 40320 - 42047 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Enterococcaceae
→
Genus
Enterococcus_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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