Cluster: HRGMv2_2539_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2539
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2539_16 | HRGMv2_2539_16_2 | 1102 | 3720 | - | 4.A.2.1.17 |
| pfam | HRGMv2_2539_16 | HRGMv2_2539_16_3 | 3892 | 4263 | - | DUF1304 |
| CAZyme | HRGMv2_2539_16 | HRGMv2_2539_16_4 | 4338 | 6089 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2539_16 | HRGMv2_2539_16_5 | 6571 | 8070 | + | 3.A.1.121.3 |
| pfam | HRGMv2_2539_16 | HRGMv2_2539_16_6 | 8123 | 8725 | - | DUF3841 |
| pfam | HRGMv2_2539_16 | HRGMv2_2539_16_7 | 8683 | 9240 | - | DUF3841 |
| TC | HRGMv2_2539_16 | HRGMv2_2539_16_8 | 9470 | 10963 | - | 2.A.15.1.1 |
Gene ID: HRGMv2_2539_16_2
Type: TC
Location: 1102 - 3720 (-)
Type: TC
Location: 1102 - 3720 (-)
Gene ID: HRGMv2_2539_16_3
Type: pfam
Location: 3892 - 4263 (-)
Type: pfam
Location: 3892 - 4263 (-)
Gene ID: HRGMv2_2539_16_4
Type: CAZyme
Location: 4338 - 6089 (-)
Type: CAZyme
Location: 4338 - 6089 (-)
Gene ID: HRGMv2_2539_16_5
Type: TC
Location: 6571 - 8070 (+)
Type: TC
Location: 6571 - 8070 (+)
Gene ID: HRGMv2_2539_16_6
Type: pfam
Location: 8123 - 8725 (-)
Type: pfam
Location: 8123 - 8725 (-)
Gene ID: HRGMv2_2539_16_7
Type: pfam
Location: 8683 - 9240 (-)
Type: pfam
Location: 8683 - 9240 (-)
Gene ID: HRGMv2_2539_16_8
Type: TC
Location: 9470 - 10963 (-)
Type: TC
Location: 9470 - 10963 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.