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Cluster: HRGMv2_2538_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2538_220 HRGMv2_2538_220_1 3 2231 - GT35
CAZyme HRGMv2_2538_220 HRGMv2_2538_220_2 2257 3774 - GH77
TC HRGMv2_2538_220 HRGMv2_2538_220_3 4261 5532 + 3.A.1.1.26
TC HRGMv2_2538_220 HRGMv2_2538_220_4 5642 6934 + 3.A.1.1.26
TC HRGMv2_2538_220 HRGMv2_2538_220_5 6936 7778 + 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2538_220 HRGMv2_2538_220_6 7924 8724 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2538_220 HRGMv2_2538_220_7 8734 9720 + LacI
TC HRGMv2_2538_220 HRGMv2_2538_220_8 9750 10691 - 2.A.115.1.1
Gene ID: HRGMv2_2538_220_1
Type: CAZyme
Location: 3 - 2231 (-)
Gene ID: HRGMv2_2538_220_2
Type: CAZyme
Location: 2257 - 3774 (-)
Gene ID: HRGMv2_2538_220_3
Type: TC
Location: 4261 - 5532 (+)
Gene ID: HRGMv2_2538_220_4
Type: TC
Location: 5642 - 6934 (+)
Gene ID: HRGMv2_2538_220_5
Type: TC
Location: 6936 - 7778 (+)
Gene ID: HRGMv2_2538_220_6
Type:
Location: 7924 - 8724 (+)
Gene ID: HRGMv2_2538_220_7
Type: TF
Location: 8734 - 9720 (+)
Gene ID: HRGMv2_2538_220_8
Type: TC
Location: 9750 - 10691 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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