Cluster: HRGMv2_2538_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: HRGMv2_2538
- CGC Family ID: CGCFAM_00311
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2538_201 | HRGMv2_2538_201_12 | 12095 | 13018 | - | 3.A.1.1.29 |
| TC | HRGMv2_2538_201 | HRGMv2_2538_201_13 | 13032 | 13961 | - | 3.A.1.1.10 |
| CAZyme | HRGMv2_2538_201 | HRGMv2_2538_201_14 | 14169 | 16049 | - | GH20 |
| pfam | HRGMv2_2538_201 | HRGMv2_2538_201_15 | 16043 | 16924 | - | ROK |
| CAZyme | HRGMv2_2538_201 | HRGMv2_2538_201_16 | 16995 | 19640 | - | GH38 |
| CAZyme | HRGMv2_2538_201 | HRGMv2_2538_201_17 | 19739 | 21019 | - | GH125 |
| CAZyme | HRGMv2_2538_201 | HRGMv2_2538_201_18 | 21190 | 23286 | + | GH92 |
Gene ID: HRGMv2_2538_201_12
Type: TC
Location: 12095 - 13018 (-)
Type: TC
Location: 12095 - 13018 (-)
Gene ID: HRGMv2_2538_201_13
Type: TC
Location: 13032 - 13961 (-)
Type: TC
Location: 13032 - 13961 (-)
Gene ID: HRGMv2_2538_201_14
Type: CAZyme
Location: 14169 - 16049 (-)
Type: CAZyme
Location: 14169 - 16049 (-)
Gene ID: HRGMv2_2538_201_15
Type: pfam
Location: 16043 - 16924 (-)
Type: pfam
Location: 16043 - 16924 (-)
Gene ID: HRGMv2_2538_201_16
Type: CAZyme
Location: 16995 - 19640 (-)
Type: CAZyme
Location: 16995 - 19640 (-)
Gene ID: HRGMv2_2538_201_17
Type: CAZyme
Location: 19739 - 21019 (-)
Type: CAZyme
Location: 19739 - 21019 (-)
Gene ID: HRGMv2_2538_201_18
Type: CAZyme
Location: 21190 - 23286 (+)
Type: CAZyme
Location: 21190 - 23286 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp019414905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.