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Cluster: HRGMv2_2531_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2531_1 HRGMv2_2531_1_317 346799 347722 - 3.A.1.1.29
TC HRGMv2_2531_1 HRGMv2_2531_1_318 347736 348665 - 3.A.1.1.10
CAZyme HRGMv2_2531_1 HRGMv2_2531_1_319 348875 350755 - GH20
pfam HRGMv2_2531_1 HRGMv2_2531_1_320 350749 351630 - ROK
CAZyme HRGMv2_2531_1 HRGMv2_2531_1_321 351702 354347 - GH38
CAZyme HRGMv2_2531_1 HRGMv2_2531_1_322 354445 355725 - GH125
CAZyme HRGMv2_2531_1 HRGMv2_2531_1_323 355896 357983 + GH92
peptidase HRGMv2_2531_1 HRGMv2_2531_1_324 358246 359145 - I87.UPW
TC HRGMv2_2531_1 HRGMv2_2531_1_325 359905 361410 - 3.A.1.15.3
TC HRGMv2_2531_1 HRGMv2_2531_1_326 361420 362226 - 3.A.1.15.3
TC HRGMv2_2531_1 HRGMv2_2531_1_327 362219 362923 - 3.A.1.15.3
Gene ID: HRGMv2_2531_1_317
Type: TC
Location: 346799 - 347722 (-)
Gene ID: HRGMv2_2531_1_318
Type: TC
Location: 347736 - 348665 (-)
Gene ID: HRGMv2_2531_1_319
Type: CAZyme
Location: 348875 - 350755 (-)
Gene ID: HRGMv2_2531_1_320
Type: pfam
Location: 350749 - 351630 (-)
Gene ID: HRGMv2_2531_1_321
Type: CAZyme
Location: 351702 - 354347 (-)
Gene ID: HRGMv2_2531_1_322
Type: CAZyme
Location: 354445 - 355725 (-)
Gene ID: HRGMv2_2531_1_323
Type: CAZyme
Location: 355896 - 357983 (+)
Gene ID: HRGMv2_2531_1_324
Type: peptidase
Location: 358246 - 359145 (-)
Gene ID: HRGMv2_2531_1_325
Type: TC
Location: 359905 - 361410 (-)
Gene ID: HRGMv2_2531_1_326
Type: TC
Location: 361420 - 362226 (-)
Gene ID: HRGMv2_2531_1_327
Type: TC
Location: 362219 - 362923 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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