dbCAN Logo

Cluster: HRGMv2_2531_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2531_1 HRGMv2_2531_1_38 45095 46981 - 4.A.1.2.12
CAZyme HRGMv2_2531_1 HRGMv2_2531_1_39 47361 48815 + GH32
TF HRGMv2_2531_1 HRGMv2_2531_1_40 48796 49761 + LacI
TC HRGMv2_2531_1 HRGMv2_2531_1_41 49798 51072 - 2.A.6.6.11
pfam HRGMv2_2531_1 HRGMv2_2531_1_42 51072 52244 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam HRGMv2_2531_1 HRGMv2_2531_1_43 52358 52807 - ThrE_2
TC HRGMv2_2531_1 HRGMv2_2531_1_44 52809 53567 - 2.A.79.1.5
TC HRGMv2_2531_1 HRGMv2_2531_1_45 53656 55569 - 9.B.106.2.2
Gene ID: HRGMv2_2531_1_38
Type: TC
Location: 45095 - 46981 (-)
Gene ID: HRGMv2_2531_1_39
Type: CAZyme
Location: 47361 - 48815 (+)
Gene ID: HRGMv2_2531_1_40
Type: TF
Location: 48796 - 49761 (+)
Gene ID: HRGMv2_2531_1_41
Type: TC
Location: 49798 - 51072 (-)
Gene ID: HRGMv2_2531_1_42
Type: pfam
Location: 51072 - 52244 (-)
Gene ID: HRGMv2_2531_1_43
Type: pfam
Location: 52358 - 52807 (-)
Gene ID: HRGMv2_2531_1_44
Type: TC
Location: 52809 - 53567 (-)
Gene ID: HRGMv2_2531_1_45
Type: TC
Location: 53656 - 55569 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List