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Cluster: HRGMv2_2529_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2529_3 HRGMv2_2529_3_2 1343 2584 + 2.A.1.2.20
pfam HRGMv2_2529_3 HRGMv2_2529_3_3 2581 3798 - MFS_3 | MFS_1
TF HRGMv2_2529_3 HRGMv2_2529_3_4 3894 4724 + HTH_3
TC HRGMv2_2529_3 HRGMv2_2529_3_5 4780 5637 - 3.A.1.1.27
TC HRGMv2_2529_3 HRGMv2_2529_3_6 5640 6998 - 3.A.1.1.27
TC HRGMv2_2529_3 HRGMv2_2529_3_7 7057 8271 - 3.A.1.1.26
CAZyme HRGMv2_2529_3 HRGMv2_2529_3_8 8291 9880 - GH13_31
TC HRGMv2_2529_3 HRGMv2_2529_3_9 9910 11019 - 3.A.1.1.20
pfam HRGMv2_2529_3 HRGMv2_2529_3_10 11025 11696 - Hydrolase | HAD_2
CAZyme HRGMv2_2529_3 HRGMv2_2529_3_11 11681 13948 - GH65
CAZyme HRGMv2_2529_3 HRGMv2_2529_3_12 14063 15769 - CBM34 | GH13_20
CAZyme HRGMv2_2529_3 HRGMv2_2529_3_13 15771 17414 - GH13_31
Gene ID: HRGMv2_2529_3_2
Type: TC
Location: 1343 - 2584 (+)
Gene ID: HRGMv2_2529_3_3
Type: pfam
Location: 2581 - 3798 (-)
Gene ID: HRGMv2_2529_3_4
Type: TF
Location: 3894 - 4724 (+)
Gene ID: HRGMv2_2529_3_5
Type: TC
Location: 4780 - 5637 (-)
Gene ID: HRGMv2_2529_3_6
Type: TC
Location: 5640 - 6998 (-)
Gene ID: HRGMv2_2529_3_7
Type: TC
Location: 7057 - 8271 (-)
Gene ID: HRGMv2_2529_3_8
Type: CAZyme
Location: 8291 - 9880 (-)
Gene ID: HRGMv2_2529_3_9
Type: TC
Location: 9910 - 11019 (-)
Gene ID: HRGMv2_2529_3_10
Type: pfam
Location: 11025 - 11696 (-)
Gene ID: HRGMv2_2529_3_11
Type: CAZyme
Location: 11681 - 13948 (-)
Gene ID: HRGMv2_2529_3_12
Type: CAZyme
Location: 14063 - 15769 (-)
Gene ID: HRGMv2_2529_3_13
Type: CAZyme
Location: 15771 - 17414 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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