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Cluster: HRGMv2_2529_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2529_2 HRGMv2_2529_2_79 89853 90782 + GT2
pfam HRGMv2_2529_2 HRGMv2_2529_2_80 90841 91704 - Endonuclea_NS_2
NULL(UNKNOWN) HRGMv2_2529_2 HRGMv2_2529_2_81 91704 92309 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2529_2 HRGMv2_2529_2_82 92423 92788 - 1.A.22.1.8
TC HRGMv2_2529_2 HRGMv2_2529_2_83 93184 94035 + 3.A.1.24.3
TC HRGMv2_2529_2 HRGMv2_2529_2_84 94045 95103 + 3.A.1.24.6
TC HRGMv2_2529_2 HRGMv2_2529_2_85 95096 95797 + 3.A.1.24.6
pfam HRGMv2_2529_2 HRGMv2_2529_2_86 95970 97373 + Lyase_1 | FumaraseC_C
TC HRGMv2_2529_2 HRGMv2_2529_2_87 97391 98782 + 3.D.10.1.4
TC HRGMv2_2529_2 HRGMv2_2529_2_88 98952 100373 + 2.A.47.3.1
TC HRGMv2_2529_2 HRGMv2_2529_2_89 100649 102103 + 2.A.47.3.4
Gene ID: HRGMv2_2529_2_79
Type: CAZyme
Location: 89853 - 90782 (+)
Gene ID: HRGMv2_2529_2_80
Type: pfam
Location: 90841 - 91704 (-)
Gene ID: HRGMv2_2529_2_81
Type:
Location: 91704 - 92309 (-)
Gene ID: HRGMv2_2529_2_82
Type: TC
Location: 92423 - 92788 (-)
Gene ID: HRGMv2_2529_2_83
Type: TC
Location: 93184 - 94035 (+)
Gene ID: HRGMv2_2529_2_84
Type: TC
Location: 94045 - 95103 (+)
Gene ID: HRGMv2_2529_2_85
Type: TC
Location: 95096 - 95797 (+)
Gene ID: HRGMv2_2529_2_86
Type: pfam
Location: 95970 - 97373 (+)
Gene ID: HRGMv2_2529_2_87
Type: TC
Location: 97391 - 98782 (+)
Gene ID: HRGMv2_2529_2_88
Type: TC
Location: 98952 - 100373 (+)
Gene ID: HRGMv2_2529_2_89
Type: TC
Location: 100649 - 102103 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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