Cluster: HRGMv2_2529_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2529
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2529_13 | HRGMv2_2529_13_27 | 30293 | 32203 | - | 4.A.1.2.6 |
| TF | HRGMv2_2529_13 | HRGMv2_2529_13_28 | 32379 | 33092 | + | GntR |
| CAZyme | HRGMv2_2529_13 | HRGMv2_2529_13_29 | 33103 | 34758 | + | GH13_29 |
| pfam | HRGMv2_2529_13 | HRGMv2_2529_13_30 | 34954 | 37497 | - | FtsX | FtsX |
| TC | HRGMv2_2529_13 | HRGMv2_2529_13_31 | 37515 | 38216 | - | 3.A.1.122.14 |
| pfam | HRGMv2_2529_13 | HRGMv2_2529_13_32 | 38323 | 38781 | - | ThrE | ThrE_2 |
| TC | HRGMv2_2529_13 | HRGMv2_2529_13_33 | 38783 | 39550 | - | 2.A.79.1.5 |
| TC | HRGMv2_2529_13 | HRGMv2_2529_13_34 | 39562 | 41103 | - | 3.A.1.120.6 |
| NULL(UNKNOWN) | HRGMv2_2529_13 | HRGMv2_2529_13_35 | 41162 | 41530 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2529_13 | HRGMv2_2529_13_36 | 41738 | 42340 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2529_13 | HRGMv2_2529_13_37 | 42410 | 44197 | - | 2.A.37.2.1 |
Gene ID: HRGMv2_2529_13_27
Type: TC
Location: 30293 - 32203 (-)
Type: TC
Location: 30293 - 32203 (-)
Gene ID: HRGMv2_2529_13_28
Type: TF
Location: 32379 - 33092 (+)
Type: TF
Location: 32379 - 33092 (+)
Gene ID: HRGMv2_2529_13_29
Type: CAZyme
Location: 33103 - 34758 (+)
Type: CAZyme
Location: 33103 - 34758 (+)
Gene ID: HRGMv2_2529_13_30
Type: pfam
Location: 34954 - 37497 (-)
Type: pfam
Location: 34954 - 37497 (-)
Gene ID: HRGMv2_2529_13_31
Type: TC
Location: 37515 - 38216 (-)
Type: TC
Location: 37515 - 38216 (-)
Gene ID: HRGMv2_2529_13_32
Type: pfam
Location: 38323 - 38781 (-)
Type: pfam
Location: 38323 - 38781 (-)
Gene ID: HRGMv2_2529_13_33
Type: TC
Location: 38783 - 39550 (-)
Type: TC
Location: 38783 - 39550 (-)
Gene ID: HRGMv2_2529_13_34
Type: TC
Location: 39562 - 41103 (-)
Type: TC
Location: 39562 - 41103 (-)
Gene ID: HRGMv2_2529_13_35
Type:
Location: 41162 - 41530 (-)
Type:
Location: 41162 - 41530 (-)
Gene ID: HRGMv2_2529_13_36
Type:
Location: 41738 - 42340 (+)
Type:
Location: 41738 - 42340 (+)
Gene ID: HRGMv2_2529_13_37
Type: TC
Location: 42410 - 44197 (-)
Type: TC
Location: 42410 - 44197 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus jensenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.