Cluster: HRGMv2_2529_CGC11
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2529
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_17 | 16303 | 17514 | - | 2.A.1.11.1 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_18 | 17728 | 18210 | - | 4.A.1.1.11 |
| NULL(UNKNOWN) | HRGMv2_2529_8 | HRGMv2_2529_8_19 | 18221 | 18712 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2529_8 | HRGMv2_2529_8_20 | 18765 | 19487 | - | HTH_6 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_21 | 19610 | 21448 | - | 4.A.1.1.8 |
| CAZyme | HRGMv2_2529_8 | HRGMv2_2529_8_22 | 21558 | 22901 | - | GH4 |
| peptidase | HRGMv2_2529_8 | HRGMv2_2529_8_23 | 23141 | 23899 | - | S09.UPW |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_24 | 23915 | 25135 | - | 2.A.1.15.13 |
| sulfatase | HRGMv2_2529_8 | HRGMv2_2529_8_25 | 25391 | 26302 | - | S1_7 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_26 | 26328 | 27527 | - | 2.A.1.68.1 |
| peptidase | HRGMv2_2529_8 | HRGMv2_2529_8_27 | 27730 | 28614 | + | S09.UNW |
| TF | HRGMv2_2529_8 | HRGMv2_2529_8_28 | 28650 | 29507 | + | HTH_AraC |
| CAZyme | HRGMv2_2529_8 | HRGMv2_2529_8_29 | 30020 | 31507 | - | GH1 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_30 | 31518 | 33488 | - | 4.A.1.2.6 |
| pfam | HRGMv2_2529_8 | HRGMv2_2529_8_31 | 33684 | 34517 | - | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_2529_8 | HRGMv2_2529_8_32 | 34517 | 35677 | - | CE9 |
| CAZyme | HRGMv2_2529_8 | HRGMv2_2529_8_33 | 35822 | 38800 | + | GH31_18 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_34 | 38851 | 39603 | - | 9.B.141.1.2 |
| TC | HRGMv2_2529_8 | HRGMv2_2529_8_35 | 39605 | 40705 | - | 9.B.141.1.3 |
Gene ID: HRGMv2_2529_8_17
Type: TC
Location: 16303 - 17514 (-)
Type: TC
Location: 16303 - 17514 (-)
Gene ID: HRGMv2_2529_8_18
Type: TC
Location: 17728 - 18210 (-)
Type: TC
Location: 17728 - 18210 (-)
Gene ID: HRGMv2_2529_8_19
Type:
Location: 18221 - 18712 (-)
Type:
Location: 18221 - 18712 (-)
Gene ID: HRGMv2_2529_8_20
Type: TF
Location: 18765 - 19487 (-)
Type: TF
Location: 18765 - 19487 (-)
Gene ID: HRGMv2_2529_8_21
Type: TC
Location: 19610 - 21448 (-)
Type: TC
Location: 19610 - 21448 (-)
Gene ID: HRGMv2_2529_8_22
Type: CAZyme
Location: 21558 - 22901 (-)
Type: CAZyme
Location: 21558 - 22901 (-)
Gene ID: HRGMv2_2529_8_23
Type: peptidase
Location: 23141 - 23899 (-)
Type: peptidase
Location: 23141 - 23899 (-)
Gene ID: HRGMv2_2529_8_24
Type: TC
Location: 23915 - 25135 (-)
Type: TC
Location: 23915 - 25135 (-)
Gene ID: HRGMv2_2529_8_25
Type: sulfatase
Location: 25391 - 26302 (-)
Type: sulfatase
Location: 25391 - 26302 (-)
Gene ID: HRGMv2_2529_8_26
Type: TC
Location: 26328 - 27527 (-)
Type: TC
Location: 26328 - 27527 (-)
Gene ID: HRGMv2_2529_8_27
Type: peptidase
Location: 27730 - 28614 (+)
Type: peptidase
Location: 27730 - 28614 (+)
Gene ID: HRGMv2_2529_8_28
Type: TF
Location: 28650 - 29507 (+)
Type: TF
Location: 28650 - 29507 (+)
Gene ID: HRGMv2_2529_8_29
Type: CAZyme
Location: 30020 - 31507 (-)
Type: CAZyme
Location: 30020 - 31507 (-)
Gene ID: HRGMv2_2529_8_30
Type: TC
Location: 31518 - 33488 (-)
Type: TC
Location: 31518 - 33488 (-)
Gene ID: HRGMv2_2529_8_31
Type: pfam
Location: 33684 - 34517 (-)
Type: pfam
Location: 33684 - 34517 (-)
Gene ID: HRGMv2_2529_8_32
Type: CAZyme
Location: 34517 - 35677 (-)
Type: CAZyme
Location: 34517 - 35677 (-)
Gene ID: HRGMv2_2529_8_33
Type: CAZyme
Location: 35822 - 38800 (+)
Type: CAZyme
Location: 35822 - 38800 (+)
Gene ID: HRGMv2_2529_8_34
Type: TC
Location: 38851 - 39603 (-)
Type: TC
Location: 38851 - 39603 (-)
Gene ID: HRGMv2_2529_8_35
Type: TC
Location: 39605 - 40705 (-)
Type: TC
Location: 39605 - 40705 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus jensenii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.