Cluster: HRGMv2_2522_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2522
- CGC Family ID: CGCFAM_00463
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_103 | 105689 | 107197 | - | GT4 |
| TC | HRGMv2_2522_4 | HRGMv2_2522_4_104 | 107211 | 109598 | - | 3.A.5.10.1 |
| pfam | HRGMv2_2522_4 | HRGMv2_2522_4_105 | 109585 | 110577 | - | Sec-ASP3 |
| TC | HRGMv2_2522_4 | HRGMv2_2522_4_106 | 110574 | 112133 | - | 3.A.5.10.1 |
| TC | HRGMv2_2522_4 | HRGMv2_2522_4_107 | 112140 | 113684 | - | 3.A.5.10.1 |
| TC | HRGMv2_2522_4 | HRGMv2_2522_4_108 | 113684 | 114913 | - | 3.A.5.4.1 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_109 | 115037 | 116233 | - | GT101 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_110 | 116294 | 117169 | - | GT2 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_111 | 117162 | 118346 | - | GT8 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_112 | 118336 | 119577 | - | GT8 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_113 | 119574 | 120779 | - | GT8 |
| CAZyme | HRGMv2_2522_4 | HRGMv2_2522_4_114 | 120788 | 121795 | - | GT113 |
Gene ID: HRGMv2_2522_4_103
Type: CAZyme
Location: 105689 - 107197 (-)
Type: CAZyme
Location: 105689 - 107197 (-)
Gene ID: HRGMv2_2522_4_104
Type: TC
Location: 107211 - 109598 (-)
Type: TC
Location: 107211 - 109598 (-)
Gene ID: HRGMv2_2522_4_105
Type: pfam
Location: 109585 - 110577 (-)
Type: pfam
Location: 109585 - 110577 (-)
Gene ID: HRGMv2_2522_4_106
Type: TC
Location: 110574 - 112133 (-)
Type: TC
Location: 110574 - 112133 (-)
Gene ID: HRGMv2_2522_4_107
Type: TC
Location: 112140 - 113684 (-)
Type: TC
Location: 112140 - 113684 (-)
Gene ID: HRGMv2_2522_4_108
Type: TC
Location: 113684 - 114913 (-)
Type: TC
Location: 113684 - 114913 (-)
Gene ID: HRGMv2_2522_4_109
Type: CAZyme
Location: 115037 - 116233 (-)
Type: CAZyme
Location: 115037 - 116233 (-)
Gene ID: HRGMv2_2522_4_110
Type: CAZyme
Location: 116294 - 117169 (-)
Type: CAZyme
Location: 116294 - 117169 (-)
Gene ID: HRGMv2_2522_4_111
Type: CAZyme
Location: 117162 - 118346 (-)
Type: CAZyme
Location: 117162 - 118346 (-)
Gene ID: HRGMv2_2522_4_112
Type: CAZyme
Location: 118336 - 119577 (-)
Type: CAZyme
Location: 118336 - 119577 (-)
Gene ID: HRGMv2_2522_4_113
Type: CAZyme
Location: 119574 - 120779 (-)
Type: CAZyme
Location: 119574 - 120779 (-)
Gene ID: HRGMv2_2522_4_114
Type: CAZyme
Location: 120788 - 121795 (-)
Type: CAZyme
Location: 120788 - 121795 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus agalactiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.