Cluster: HRGMv2_2501_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2501
- CGC Family ID: CGCFAM_01421
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2501_16 | HRGMv2_2501_16_18 | 14323 | 15102 | - | CE1 |
| pfam | HRGMv2_2501_16 | HRGMv2_2501_16_19 | 15171 | 16832 | - | Lactamase_B | RMMBL | Lactamase_B_2 | RNase_J_C | RNase_J_b_CASP |
| pfam | HRGMv2_2501_16 | HRGMv2_2501_16_20 | 17008 | 19284 | - | DHH | DHHA1 | ssDNA-exonuc_C | RecJ_OB |
| TC | HRGMv2_2501_16 | HRGMv2_2501_16_21 | 19405 | 20163 | + | 3.A.1.3.9 |
| TC | HRGMv2_2501_16 | HRGMv2_2501_16_22 | 20174 | 20968 | + | 3.A.1.3.16 |
| TC | HRGMv2_2501_16 | HRGMv2_2501_16_23 | 20981 | 21415 | + | 3.A.1.3.16 |
Gene ID: HRGMv2_2501_16_18
Type: CAZyme
Location: 14323 - 15102 (-)
Type: CAZyme
Location: 14323 - 15102 (-)
Gene ID: HRGMv2_2501_16_19
Type: pfam
Location: 15171 - 16832 (-)
Type: pfam
Location: 15171 - 16832 (-)
Gene ID: HRGMv2_2501_16_20
Type: pfam
Location: 17008 - 19284 (-)
Type: pfam
Location: 17008 - 19284 (-)
Gene ID: HRGMv2_2501_16_21
Type: TC
Location: 19405 - 20163 (+)
Type: TC
Location: 19405 - 20163 (+)
Gene ID: HRGMv2_2501_16_22
Type: TC
Location: 20174 - 20968 (+)
Type: TC
Location: 20174 - 20968 (+)
Gene ID: HRGMv2_2501_16_23
Type: TC
Location: 20981 - 21415 (+)
Type: TC
Location: 20981 - 21415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus oralis_BW
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.