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Cluster: HRGMv2_2501_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2501_10 HRGMv2_2501_10_5 3350 3982 - 2.A.7.3.12
NULL(UNKNOWN) HRGMv2_2501_10 HRGMv2_2501_10_6 3954 4229 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2501_10 HRGMv2_2501_10_7 4307 6808 - GT51
pfam HRGMv2_2501_10 HRGMv2_2501_10_8 6949 8205 + tRNA-synt_1b | S4 | SYY_C-terminal
TC HRGMv2_2501_10 HRGMv2_2501_10_9 8283 10346 - 3.A.3.32.6
pfam HRGMv2_2501_10 HRGMv2_2501_10_10 10348 10626 - DUF6110
pfam HRGMv2_2501_10 HRGMv2_2501_10_11 10778 11626 + Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 | Zn_ribbon_RlmA
CAZyme HRGMv2_2501_10 HRGMv2_2501_10_12 12195 14453 - GT35
CAZyme HRGMv2_2501_10 HRGMv2_2501_10_13 14478 15995 - GH77
TC HRGMv2_2501_10 HRGMv2_2501_10_14 16468 17736 + 3.A.1.1.26
TC HRGMv2_2501_10 HRGMv2_2501_10_15 17861 19153 + 3.A.1.1.26
TC HRGMv2_2501_10 HRGMv2_2501_10_16 19155 19997 + 3.A.1.1.26
NULL(UNKNOWN) HRGMv2_2501_10 HRGMv2_2501_10_17 20171 20977 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2501_10 HRGMv2_2501_10_18 20987 21973 + LacI
TC HRGMv2_2501_10 HRGMv2_2501_10_19 22007 22948 - 2.A.115.1.1
Gene ID: HRGMv2_2501_10_5
Type: TC
Location: 3350 - 3982 (-)
Gene ID: HRGMv2_2501_10_6
Type:
Location: 3954 - 4229 (-)
Gene ID: HRGMv2_2501_10_7
Type: CAZyme
Location: 4307 - 6808 (-)
Gene ID: HRGMv2_2501_10_8
Type: pfam
Location: 6949 - 8205 (+)
Gene ID: HRGMv2_2501_10_9
Type: TC
Location: 8283 - 10346 (-)
Gene ID: HRGMv2_2501_10_10
Type: pfam
Location: 10348 - 10626 (-)
Gene ID: HRGMv2_2501_10_11
Type: pfam
Location: 10778 - 11626 (+)
Gene ID: HRGMv2_2501_10_12
Type: CAZyme
Location: 12195 - 14453 (-)
Gene ID: HRGMv2_2501_10_13
Type: CAZyme
Location: 14478 - 15995 (-)
Gene ID: HRGMv2_2501_10_14
Type: TC
Location: 16468 - 17736 (+)
Gene ID: HRGMv2_2501_10_15
Type: TC
Location: 17861 - 19153 (+)
Gene ID: HRGMv2_2501_10_16
Type: TC
Location: 19155 - 19997 (+)
Gene ID: HRGMv2_2501_10_17
Type:
Location: 20171 - 20977 (+)
Gene ID: HRGMv2_2501_10_18
Type: TF
Location: 20987 - 21973 (+)
Gene ID: HRGMv2_2501_10_19
Type: TC
Location: 22007 - 22948 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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