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Cluster: HRGMv2_2501_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2501_35 HRGMv2_2501_35_3 2338 6369 - GH20 | GH20
TF HRGMv2_2501_35 HRGMv2_2501_35_4 6664 7380 - GntR
CAZyme HRGMv2_2501_35 HRGMv2_2501_35_5 7701 9488 + GH35
TC HRGMv2_2501_35 HRGMv2_2501_35_6 9485 9961 + 4.A.6.1.18
TC HRGMv2_2501_35 HRGMv2_2501_35_7 9988 10893 + 4.A.6.1.18
TC HRGMv2_2501_35 HRGMv2_2501_35_8 10880 11701 + 4.A.6.1.18
TC HRGMv2_2501_35 HRGMv2_2501_35_9 11705 12109 + 4.A.6.1.18
Gene ID: HRGMv2_2501_35_3
Type: CAZyme
Location: 2338 - 6369 (-)
Gene ID: HRGMv2_2501_35_4
Type: TF
Location: 6664 - 7380 (-)
Gene ID: HRGMv2_2501_35_5
Type: CAZyme
Location: 7701 - 9488 (+)
Gene ID: HRGMv2_2501_35_6
Type: TC
Location: 9485 - 9961 (+)
Gene ID: HRGMv2_2501_35_7
Type: TC
Location: 9988 - 10893 (+)
Gene ID: HRGMv2_2501_35_8
Type: TC
Location: 10880 - 11701 (+)
Gene ID: HRGMv2_2501_35_9
Type: TC
Location: 11705 - 12109 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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