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Cluster: HRGMv2_2501_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2501_4 HRGMv2_2501_4_3 1622 2326 + 3.A.1.15.3
TC HRGMv2_2501_4 HRGMv2_2501_4_4 2319 3125 + 3.A.1.15.3
TC HRGMv2_2501_4 HRGMv2_2501_4_5 3135 4640 + 3.A.1.15.3
CAZyme HRGMv2_2501_4 HRGMv2_2501_4_6 5172 6854 + GH29
CAZyme HRGMv2_2501_4 HRGMv2_2501_4_7 6891 8978 - GH92
CAZyme HRGMv2_2501_4 HRGMv2_2501_4_8 9149 10429 + GH125
CAZyme HRGMv2_2501_4 HRGMv2_2501_4_9 10520 13165 + GH38
pfam HRGMv2_2501_4 HRGMv2_2501_4_10 13252 14121 + ROK
CAZyme HRGMv2_2501_4 HRGMv2_2501_4_11 14115 15995 + GH20
TC HRGMv2_2501_4 HRGMv2_2501_4_12 16194 17123 + 3.A.1.1.10
TC HRGMv2_2501_4 HRGMv2_2501_4_13 17137 18060 + 3.A.1.1.29
Gene ID: HRGMv2_2501_4_3
Type: TC
Location: 1622 - 2326 (+)
Gene ID: HRGMv2_2501_4_4
Type: TC
Location: 2319 - 3125 (+)
Gene ID: HRGMv2_2501_4_5
Type: TC
Location: 3135 - 4640 (+)
Gene ID: HRGMv2_2501_4_6
Type: CAZyme
Location: 5172 - 6854 (+)
Gene ID: HRGMv2_2501_4_7
Type: CAZyme
Location: 6891 - 8978 (-)
Gene ID: HRGMv2_2501_4_8
Type: CAZyme
Location: 9149 - 10429 (+)
Gene ID: HRGMv2_2501_4_9
Type: CAZyme
Location: 10520 - 13165 (+)
Gene ID: HRGMv2_2501_4_10
Type: pfam
Location: 13252 - 14121 (+)
Gene ID: HRGMv2_2501_4_11
Type: CAZyme
Location: 14115 - 15995 (+)
Gene ID: HRGMv2_2501_4_12
Type: TC
Location: 16194 - 17123 (+)
Gene ID: HRGMv2_2501_4_13
Type: TC
Location: 17137 - 18060 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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