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Cluster: HRGMv2_2484_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2484_3 HRGMv2_2484_3_80 79946 80686 - 3.A.1.3.25
TC HRGMv2_2484_3 HRGMv2_2484_3_81 80686 82890 - 3.A.1.3.25
pfam HRGMv2_2484_3 HRGMv2_2484_3_82 83078 85069 + Helicase_C | UVR | ResIII | UvrB | UvrB_inter
STP HRGMv2_2484_3 HRGMv2_2484_3_83 85088 85552 + NUDIX
TC HRGMv2_2484_3 HRGMv2_2484_3_84 85674 86510 - 3.A.1.1.27
TC HRGMv2_2484_3 HRGMv2_2484_3_85 86510 87877 - 3.A.1.1.27
TC HRGMv2_2484_3 HRGMv2_2484_3_86 88007 89266 - 3.A.1.1.27
TF HRGMv2_2484_3 HRGMv2_2484_3_87 89613 90641 + LacI
CAZyme HRGMv2_2484_3 HRGMv2_2484_3_88 90805 92307 + GH77
CAZyme HRGMv2_2484_3 HRGMv2_2484_3_89 92329 94593 + GT35
TC HRGMv2_2484_3 HRGMv2_2484_3_90 94762 95580 + 3.A.1.3.27
TC HRGMv2_2484_3 HRGMv2_2484_3_91 95593 96402 + 3.A.1.3.2
STP HRGMv2_2484_3 HRGMv2_2484_3_92 96489 97598 + Aminotran_1_2
TC HRGMv2_2484_3 HRGMv2_2484_3_93 97681 98496 + 3.A.1.3.25
pfam HRGMv2_2484_3 HRGMv2_2484_3_94 98672 98848 + Ribosomal_S21
TC HRGMv2_2484_3 HRGMv2_2484_3_95 98921 99304 - 1.A.22.1.5
Gene ID: HRGMv2_2484_3_80
Type: TC
Location: 79946 - 80686 (-)
Gene ID: HRGMv2_2484_3_81
Type: TC
Location: 80686 - 82890 (-)
Gene ID: HRGMv2_2484_3_82
Type: pfam
Location: 83078 - 85069 (+)
Gene ID: HRGMv2_2484_3_83
Type: STP
Location: 85088 - 85552 (+)
Gene ID: HRGMv2_2484_3_84
Type: TC
Location: 85674 - 86510 (-)
Gene ID: HRGMv2_2484_3_85
Type: TC
Location: 86510 - 87877 (-)
Gene ID: HRGMv2_2484_3_86
Type: TC
Location: 88007 - 89266 (-)
Gene ID: HRGMv2_2484_3_87
Type: TF
Location: 89613 - 90641 (+)
Gene ID: HRGMv2_2484_3_88
Type: CAZyme
Location: 90805 - 92307 (+)
Gene ID: HRGMv2_2484_3_89
Type: CAZyme
Location: 92329 - 94593 (+)
Gene ID: HRGMv2_2484_3_90
Type: TC
Location: 94762 - 95580 (+)
Gene ID: HRGMv2_2484_3_91
Type: TC
Location: 95593 - 96402 (+)
Gene ID: HRGMv2_2484_3_92
Type: STP
Location: 96489 - 97598 (+)
Gene ID: HRGMv2_2484_3_93
Type: TC
Location: 97681 - 98496 (+)
Gene ID: HRGMv2_2484_3_94
Type: pfam
Location: 98672 - 98848 (+)
Gene ID: HRGMv2_2484_3_95
Type: TC
Location: 98921 - 99304 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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