Cluster: HRGMv2_2484_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2484
- CGC Family ID: CGCFAM_04138
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_109 | 104886 | 106286 | + | GH1 |
| pfam | HRGMv2_2484_2 | HRGMv2_2484_2_110 | 106467 | 106946 | + | PRD | PRD |
| TC | HRGMv2_2484_2 | HRGMv2_2484_2_111 | 107005 | 107322 | + | 4.A.3.1.1 |
| TC | HRGMv2_2484_2 | HRGMv2_2484_2_112 | 107322 | 109022 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_113 | 109125 | 110531 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_2484_2 | HRGMv2_2484_2_114 | 110634 | 111089 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_115 | 111396 | 112160 | + | CBM61 |
| TF | HRGMv2_2484_2 | HRGMv2_2484_2_116 | 112105 | 112938 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_117 | 113048 | 115210 | + | GH36 |
| TC | HRGMv2_2484_2 | HRGMv2_2484_2_118 | 115222 | 116493 | + | 3.A.1.1.28 |
| TC | HRGMv2_2484_2 | HRGMv2_2484_2_119 | 116506 | 117372 | + | 3.A.1.1.28 |
| TC | HRGMv2_2484_2 | HRGMv2_2484_2_120 | 117382 | 118215 | + | 3.A.1.1.28 |
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_121 | 118328 | 119773 | + | GH13_18 |
| CAZyme | HRGMv2_2484_2 | HRGMv2_2484_2_122 | 119895 | 121508 | + | GH13_31 |
Gene ID: HRGMv2_2484_2_109
Type: CAZyme
Location: 104886 - 106286 (+)
Type: CAZyme
Location: 104886 - 106286 (+)
Gene ID: HRGMv2_2484_2_110
Type: pfam
Location: 106467 - 106946 (+)
Type: pfam
Location: 106467 - 106946 (+)
Gene ID: HRGMv2_2484_2_111
Type: TC
Location: 107005 - 107322 (+)
Type: TC
Location: 107005 - 107322 (+)
Gene ID: HRGMv2_2484_2_112
Type: TC
Location: 107322 - 109022 (+)
Type: TC
Location: 107322 - 109022 (+)
Gene ID: HRGMv2_2484_2_113
Type: CAZyme
Location: 109125 - 110531 (+)
Type: CAZyme
Location: 109125 - 110531 (+)
Gene ID: HRGMv2_2484_2_114
Type:
Location: 110634 - 111089 (-)
Type:
Location: 110634 - 111089 (-)
Gene ID: HRGMv2_2484_2_115
Type: CAZyme
Location: 111396 - 112160 (+)
Type: CAZyme
Location: 111396 - 112160 (+)
Gene ID: HRGMv2_2484_2_116
Type: TF
Location: 112105 - 112938 (-)
Type: TF
Location: 112105 - 112938 (-)
Gene ID: HRGMv2_2484_2_117
Type: CAZyme
Location: 113048 - 115210 (+)
Type: CAZyme
Location: 113048 - 115210 (+)
Gene ID: HRGMv2_2484_2_118
Type: TC
Location: 115222 - 116493 (+)
Type: TC
Location: 115222 - 116493 (+)
Gene ID: HRGMv2_2484_2_119
Type: TC
Location: 116506 - 117372 (+)
Type: TC
Location: 116506 - 117372 (+)
Gene ID: HRGMv2_2484_2_120
Type: TC
Location: 117382 - 118215 (+)
Type: TC
Location: 117382 - 118215 (+)
Gene ID: HRGMv2_2484_2_121
Type: CAZyme
Location: 118328 - 119773 (+)
Type: CAZyme
Location: 118328 - 119773 (+)
Gene ID: HRGMv2_2484_2_122
Type: CAZyme
Location: 119895 - 121508 (+)
Type: CAZyme
Location: 119895 - 121508 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus lutetiensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.