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Cluster: HRGMv2_2484_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2484_2 HRGMv2_2484_2_82 78571 79917 + 3.A.1.1.20
TC HRGMv2_2484_2 HRGMv2_2484_2_83 79904 80779 + 3.A.1.1.20
TC HRGMv2_2484_2 HRGMv2_2484_2_84 80781 81632 + 3.A.1.1.20
TC HRGMv2_2484_2 HRGMv2_2484_2_85 81638 82726 + 3.A.1.1.27
CAZyme HRGMv2_2484_2 HRGMv2_2484_2_86 82756 84213 + GH32
pfam HRGMv2_2484_2 HRGMv2_2484_2_87 84298 84774 - Flavodoxin_NdrI
pfam HRGMv2_2484_2 HRGMv2_2484_2_88 85009 85323 + PTS_IIB
TC HRGMv2_2484_2 HRGMv2_2484_2_89 85340 85657 + 4.A.3.2.8
CAZyme HRGMv2_2484_2 HRGMv2_2484_2_90 85831 87231 - GH1
TC HRGMv2_2484_2 HRGMv2_2484_2_91 87390 88658 + 4.A.3.2.8
TF HRGMv2_2484_2 HRGMv2_2484_2_92 88711 89436 + GntR
pfam HRGMv2_2484_2 HRGMv2_2484_2_93 89510 90460 + PMI_typeI_C | PMI_typeI_cat | MPI_cupin_dom
CAZyme HRGMv2_2484_2 HRGMv2_2484_2_94 90582 90950 - GH5_8
Gene ID: HRGMv2_2484_2_82
Type: TC
Location: 78571 - 79917 (+)
Gene ID: HRGMv2_2484_2_83
Type: TC
Location: 79904 - 80779 (+)
Gene ID: HRGMv2_2484_2_84
Type: TC
Location: 80781 - 81632 (+)
Gene ID: HRGMv2_2484_2_85
Type: TC
Location: 81638 - 82726 (+)
Gene ID: HRGMv2_2484_2_86
Type: CAZyme
Location: 82756 - 84213 (+)
Gene ID: HRGMv2_2484_2_87
Type: pfam
Location: 84298 - 84774 (-)
Gene ID: HRGMv2_2484_2_88
Type: pfam
Location: 85009 - 85323 (+)
Gene ID: HRGMv2_2484_2_89
Type: TC
Location: 85340 - 85657 (+)
Gene ID: HRGMv2_2484_2_90
Type: CAZyme
Location: 85831 - 87231 (-)
Gene ID: HRGMv2_2484_2_91
Type: TC
Location: 87390 - 88658 (+)
Gene ID: HRGMv2_2484_2_92
Type: TF
Location: 88711 - 89436 (+)
Gene ID: HRGMv2_2484_2_93
Type: pfam
Location: 89510 - 90460 (+)
Gene ID: HRGMv2_2484_2_94
Type: CAZyme
Location: 90582 - 90950 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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