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Cluster: HRGMv2_2478_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2478_4 HRGMv2_2478_4_21 21428 22153 + CBM50 | GH23
TC HRGMv2_2478_4 HRGMv2_2478_4_22 22287 23183 + 2.A.4.1.4
pfam HRGMv2_2478_4 HRGMv2_2478_4_23 23207 23593 + CRCB
pfam HRGMv2_2478_4 HRGMv2_2478_4_24 23590 23952 + CRCB
CAZyme HRGMv2_2478_4 HRGMv2_2478_4_25 24104 24883 + CBM50
TC HRGMv2_2478_4 HRGMv2_2478_4_26 25099 26634 + 2.A.1.3.61
pfam HRGMv2_2478_4 HRGMv2_2478_4_27 26637 27260 + DUF4811
TC HRGMv2_2478_4 HRGMv2_2478_4_28 27709 28269 + 3.A.1.26.9
TC HRGMv2_2478_4 HRGMv2_2478_4_29 28542 29540 + 3.A.1.34.1
TC HRGMv2_2478_4 HRGMv2_2478_4_30 29545 30444 + 3.A.1.34.1
TC HRGMv2_2478_4 HRGMv2_2478_4_31 30441 31220 + 3.A.1.34.1
Gene ID: HRGMv2_2478_4_21
Type: CAZyme
Location: 21428 - 22153 (+)
Gene ID: HRGMv2_2478_4_22
Type: TC
Location: 22287 - 23183 (+)
Gene ID: HRGMv2_2478_4_23
Type: pfam
Location: 23207 - 23593 (+)
Gene ID: HRGMv2_2478_4_24
Type: pfam
Location: 23590 - 23952 (+)
Gene ID: HRGMv2_2478_4_25
Type: CAZyme
Location: 24104 - 24883 (+)
Gene ID: HRGMv2_2478_4_26
Type: TC
Location: 25099 - 26634 (+)
Gene ID: HRGMv2_2478_4_27
Type: pfam
Location: 26637 - 27260 (+)
Gene ID: HRGMv2_2478_4_28
Type: TC
Location: 27709 - 28269 (+)
Gene ID: HRGMv2_2478_4_29
Type: TC
Location: 28542 - 29540 (+)
Gene ID: HRGMv2_2478_4_30
Type: TC
Location: 29545 - 30444 (+)
Gene ID: HRGMv2_2478_4_31
Type: TC
Location: 30441 - 31220 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Lactobacillaceae
→
Genus
Weissella
→
Species
Weissella koreensis

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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