Cluster: HRGMv2_2478_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2478
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2478_2 | HRGMv2_2478_2_3 | 4140 | 5597 | - | GT4 |
| TC | HRGMv2_2478_2 | HRGMv2_2478_2_4 | 6011 | 6724 | - | 1.A.8.2.8 |
| TF | HRGMv2_2478_2 | HRGMv2_2478_2_5 | 6887 | 8434 | + | HTH_11 | Mga |
| TC | HRGMv2_2478_2 | HRGMv2_2478_2_6 | 8739 | 10001 | - | 2.A.24.2.2 |
| pfam | HRGMv2_2478_2 | HRGMv2_2478_2_7 | 10028 | 11656 | - | malic | Malic_M |
| TF | HRGMv2_2478_2 | HRGMv2_2478_2_8 | 11799 | 12713 | + | HTH_1 |
| TC | HRGMv2_2478_2 | HRGMv2_2478_2_9 | 12928 | 14112 | - | 9.B.34.1.2 |
Gene ID: HRGMv2_2478_2_3
Type: CAZyme
Location: 4140 - 5597 (-)
Type: CAZyme
Location: 4140 - 5597 (-)
Gene ID: HRGMv2_2478_2_4
Type: TC
Location: 6011 - 6724 (-)
Type: TC
Location: 6011 - 6724 (-)
Gene ID: HRGMv2_2478_2_5
Type: TF
Location: 6887 - 8434 (+)
Type: TF
Location: 6887 - 8434 (+)
Gene ID: HRGMv2_2478_2_6
Type: TC
Location: 8739 - 10001 (-)
Type: TC
Location: 8739 - 10001 (-)
Gene ID: HRGMv2_2478_2_7
Type: pfam
Location: 10028 - 11656 (-)
Type: pfam
Location: 10028 - 11656 (-)
Gene ID: HRGMv2_2478_2_8
Type: TF
Location: 11799 - 12713 (+)
Type: TF
Location: 11799 - 12713 (+)
Gene ID: HRGMv2_2478_2_9
Type: TC
Location: 12928 - 14112 (-)
Type: TC
Location: 12928 - 14112 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella koreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.