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Cluster: HRGMv2_2478_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2478_6 HRGMv2_2478_6_3 699 2135 + 2.A.2.3.3
pfam HRGMv2_2478_6 HRGMv2_2478_6_4 2196 3761 + UxaE
pfam HRGMv2_2478_6 HRGMv2_2478_6_5 3780 5207 + UxaC
TC HRGMv2_2478_6 HRGMv2_2478_6_6 5491 6900 + 2.A.2.3.3
CAZyme HRGMv2_2478_6 HRGMv2_2478_6_7 6925 9063 + GH31_3
TF HRGMv2_2478_6 HRGMv2_2478_6_8 9088 9912 + HTH_AraC
TC HRGMv2_2478_6 HRGMv2_2478_6_9 10124 11473 + 2.A.66.1.4
TC HRGMv2_2478_6 HRGMv2_2478_6_10 11650 13098 + 2.A.1.1.41
Gene ID: HRGMv2_2478_6_3
Type: TC
Location: 699 - 2135 (+)
Gene ID: HRGMv2_2478_6_4
Type: pfam
Location: 2196 - 3761 (+)
Gene ID: HRGMv2_2478_6_5
Type: pfam
Location: 3780 - 5207 (+)
Gene ID: HRGMv2_2478_6_6
Type: TC
Location: 5491 - 6900 (+)
Gene ID: HRGMv2_2478_6_7
Type: CAZyme
Location: 6925 - 9063 (+)
Gene ID: HRGMv2_2478_6_8
Type: TF
Location: 9088 - 9912 (+)
Gene ID: HRGMv2_2478_6_9
Type: TC
Location: 10124 - 11473 (+)
Gene ID: HRGMv2_2478_6_10
Type: TC
Location: 11650 - 13098 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Lactobacillaceae
→
Genus
Weissella
→
Species
Weissella koreensis

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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