Cluster: HRGMv2_2478_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2478
- CGC Family ID: CGCFAM_00040
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2478_1 | HRGMv2_2478_1_108 | 111078 | 112526 | + | 2.A.66.2.16 |
| CAZyme | HRGMv2_2478_1 | HRGMv2_2478_1_109 | 112523 | 113290 | + | GT26 |
| NULL(UNKNOWN) | HRGMv2_2478_1 | HRGMv2_2478_1_110 | 113283 | 113840 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2478_1 | HRGMv2_2478_1_111 | 113837 | 114904 | + | GT4 |
| pfam | HRGMv2_2478_1 | HRGMv2_2478_1_112 | 114909 | 115871 | + | Acyl_transf_3 |
| CAZyme | HRGMv2_2478_1 | HRGMv2_2478_1_113 | 115876 | 117072 | + | GT4 |
Gene ID: HRGMv2_2478_1_108
Type: TC
Location: 111078 - 112526 (+)
Type: TC
Location: 111078 - 112526 (+)
Gene ID: HRGMv2_2478_1_109
Type: CAZyme
Location: 112523 - 113290 (+)
Type: CAZyme
Location: 112523 - 113290 (+)
Gene ID: HRGMv2_2478_1_110
Type:
Location: 113283 - 113840 (+)
Type:
Location: 113283 - 113840 (+)
Gene ID: HRGMv2_2478_1_111
Type: CAZyme
Location: 113837 - 114904 (+)
Type: CAZyme
Location: 113837 - 114904 (+)
Gene ID: HRGMv2_2478_1_112
Type: pfam
Location: 114909 - 115871 (+)
Type: pfam
Location: 114909 - 115871 (+)
Gene ID: HRGMv2_2478_1_113
Type: CAZyme
Location: 115876 - 117072 (+)
Type: CAZyme
Location: 115876 - 117072 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella koreensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.