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Cluster: HRGMv2_2454_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2454_1 HRGMv2_2454_1_77 80045 81082 + 9.A.11.1.1
pfam HRGMv2_2454_1 HRGMv2_2454_1_78 81139 81495 + SpoVAC_SpoVAEB
TC HRGMv2_2454_1 HRGMv2_2454_1_79 81525 83171 + 2.A.58.2.2
NULL(UNKNOWN) HRGMv2_2454_1 HRGMv2_2454_1_80 83222 83485 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2454_1 HRGMv2_2454_1_81 83577 84344 + GH73
pfam HRGMv2_2454_1 HRGMv2_2454_1_82 84435 85151 + RelA_SpoT
pfam HRGMv2_2454_1 HRGMv2_2454_1_83 85314 86234 + PBP_like_2 | PBP_like_2 | SBP_bac_11
TC HRGMv2_2454_1 HRGMv2_2454_1_84 86248 87135 + 3.A.1.7.5
TC HRGMv2_2454_1 HRGMv2_2454_1_85 87128 88003 + 3.A.1.7.5
TC HRGMv2_2454_1 HRGMv2_2454_1_86 87990 88739 + 3.A.1.7.5
Gene ID: HRGMv2_2454_1_77
Type: TC
Location: 80045 - 81082 (+)
Gene ID: HRGMv2_2454_1_78
Type: pfam
Location: 81139 - 81495 (+)
Gene ID: HRGMv2_2454_1_79
Type: TC
Location: 81525 - 83171 (+)
Gene ID: HRGMv2_2454_1_80
Type:
Location: 83222 - 83485 (-)
Gene ID: HRGMv2_2454_1_81
Type: CAZyme
Location: 83577 - 84344 (+)
Gene ID: HRGMv2_2454_1_82
Type: pfam
Location: 84435 - 85151 (+)
Gene ID: HRGMv2_2454_1_83
Type: pfam
Location: 85314 - 86234 (+)
Gene ID: HRGMv2_2454_1_84
Type: TC
Location: 86248 - 87135 (+)
Gene ID: HRGMv2_2454_1_85
Type: TC
Location: 87128 - 88003 (+)
Gene ID: HRGMv2_2454_1_86
Type: TC
Location: 87990 - 88739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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