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Cluster: HRGMv2_2454_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2454_39 HRGMv2_2454_39_8 6909 8192 - 2.A.56.1.4
pfam HRGMv2_2454_39 HRGMv2_2454_39_9 8185 8682 - DctQ
TC HRGMv2_2454_39 HRGMv2_2454_39_10 8697 9698 - 2.A.56.1.9
TF HRGMv2_2454_39 HRGMv2_2454_39_11 9950 10669 - GntR
TC HRGMv2_2454_39 HRGMv2_2454_39_12 11291 12658 + 2.A.66.1.32
CAZyme HRGMv2_2454_39 HRGMv2_2454_39_13 12725 14728 - GH42
NULL(UNKNOWN) HRGMv2_2454_39 HRGMv2_2454_39_14 14749 14871 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2454_39 HRGMv2_2454_39_15 15048 16265 - 2.A.86.1.8
Gene ID: HRGMv2_2454_39_8
Type: TC
Location: 6909 - 8192 (-)
Gene ID: HRGMv2_2454_39_9
Type: pfam
Location: 8185 - 8682 (-)
Gene ID: HRGMv2_2454_39_10
Type: TC
Location: 8697 - 9698 (-)
Gene ID: HRGMv2_2454_39_11
Type: TF
Location: 9950 - 10669 (-)
Gene ID: HRGMv2_2454_39_12
Type: TC
Location: 11291 - 12658 (+)
Gene ID: HRGMv2_2454_39_13
Type: CAZyme
Location: 12725 - 14728 (-)
Gene ID: HRGMv2_2454_39_14
Type:
Location: 14749 - 14871 (-)
Gene ID: HRGMv2_2454_39_15
Type: TC
Location: 15048 - 16265 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2454_39_13 vegan > omnivore 1.17279 0.03830
HRGMv2_2454_39_14 vegan > omnivore 1.87613 0.03830

🧭 Explore Read Mapping of CGC

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