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Cluster: HRGMv2_2454_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2454_34 HRGMv2_2454_34_10 11044 12786 - 9.B.33.1.2
sulfatase HRGMv2_2454_34 HRGMv2_2454_34_11 12985 14472 - S1_11
TC HRGMv2_2454_34 HRGMv2_2454_34_12 14483 15304 - 3.A.1.1.34
TC HRGMv2_2454_34 HRGMv2_2454_34_13 15304 16230 - 3.A.1.1.20
STP HRGMv2_2454_34 HRGMv2_2454_34_14 16237 17562 - SBP_bac_1
CAZyme HRGMv2_2454_34 HRGMv2_2454_34_15 17683 18933 - GH28
CAZyme HRGMv2_2454_34 HRGMv2_2454_34_16 18966 21209 - GH3
pfam HRGMv2_2454_34 HRGMv2_2454_34_17 21699 22757 - URO-D
pfam HRGMv2_2454_34 HRGMv2_2454_34_18 23053 23487 - Transposase_20
CAZyme HRGMv2_2454_34 HRGMv2_2454_34_19 24124 25578 + GH29
Gene ID: HRGMv2_2454_34_10
Type: TC
Location: 11044 - 12786 (-)
Gene ID: HRGMv2_2454_34_11
Type: sulfatase
Location: 12985 - 14472 (-)
Gene ID: HRGMv2_2454_34_12
Type: TC
Location: 14483 - 15304 (-)
Gene ID: HRGMv2_2454_34_13
Type: TC
Location: 15304 - 16230 (-)
Gene ID: HRGMv2_2454_34_14
Type: STP
Location: 16237 - 17562 (-)
Gene ID: HRGMv2_2454_34_15
Type: CAZyme
Location: 17683 - 18933 (-)
Gene ID: HRGMv2_2454_34_16
Type: CAZyme
Location: 18966 - 21209 (-)
Gene ID: HRGMv2_2454_34_17
Type: pfam
Location: 21699 - 22757 (-)
Gene ID: HRGMv2_2454_34_18
Type: pfam
Location: 23053 - 23487 (-)
Gene ID: HRGMv2_2454_34_19
Type: CAZyme
Location: 24124 - 25578 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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