Cluster: HRGMv2_2453_CGC7
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2453
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2453_3 | HRGMv2_2453_3_35 | 39478 | 40179 | + | 3.A.1.122.7 |
| pfam | HRGMv2_2453_3 | HRGMv2_2453_3_36 | 40189 | 43398 | + | FtsX | FtsX |
| CAZyme | HRGMv2_2453_3 | HRGMv2_2453_3_37 | 43418 | 44734 | + | GH13_20 |
Gene ID: HRGMv2_2453_3_35
Type: TC
Location: 39478 - 40179 (+)
Type: TC
Location: 39478 - 40179 (+)
Gene ID: HRGMv2_2453_3_36
Type: pfam
Location: 40189 - 43398 (+)
Type: pfam
Location: 40189 - 43398 (+)
Gene ID: HRGMv2_2453_3_37
Type: CAZyme
Location: 43418 - 44734 (+)
Type: CAZyme
Location: 43418 - 44734 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2453_3_36 | vegan > omnivore | 1.07158 | 0.00224 |
| HRGMv2_2453_3_37 | vegan > omnivore | 1.75158 | 0.00224 |