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Cluster: HRGMv2_2453_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2453_29 HRGMv2_2453_29_7 6136 7545 + 3.B.1.1.5
pfam HRGMv2_2453_29 HRGMv2_2453_29_8 7560 7898 + OAD_gamma
TC HRGMv2_2453_29 HRGMv2_2453_29_9 7915 8280 + 3.B.1.1.2
TC HRGMv2_2453_29 HRGMv2_2453_29_10 8307 9431 + 3.B.1.1.3
TC HRGMv2_2453_29 HRGMv2_2453_29_11 9448 10854 + 3.B.1.1.1
TF HRGMv2_2453_29 HRGMv2_2453_29_12 11140 11616 + MarR
TC HRGMv2_2453_29 HRGMv2_2453_29_13 11609 13342 + 3.A.1.135.5
TC HRGMv2_2453_29 HRGMv2_2453_29_14 13335 15236 + 3.A.1.135.5
TC HRGMv2_2453_29 HRGMv2_2453_29_15 16004 17332 + 2.A.23.1.5
TF HRGMv2_2453_29 HRGMv2_2453_29_16 17495 18388 + HTH_6
TC HRGMv2_2453_29 HRGMv2_2453_29_17 18586 20475 + 4.A.1.2.11
CAZyme HRGMv2_2453_29 HRGMv2_2453_29_18 20480 21877 + GH1
Gene ID: HRGMv2_2453_29_7
Type: TC
Location: 6136 - 7545 (+)
Gene ID: HRGMv2_2453_29_8
Type: pfam
Location: 7560 - 7898 (+)
Gene ID: HRGMv2_2453_29_9
Type: TC
Location: 7915 - 8280 (+)
Gene ID: HRGMv2_2453_29_10
Type: TC
Location: 8307 - 9431 (+)
Gene ID: HRGMv2_2453_29_11
Type: TC
Location: 9448 - 10854 (+)
Gene ID: HRGMv2_2453_29_12
Type: TF
Location: 11140 - 11616 (+)
Gene ID: HRGMv2_2453_29_13
Type: TC
Location: 11609 - 13342 (+)
Gene ID: HRGMv2_2453_29_14
Type: TC
Location: 13335 - 15236 (+)
Gene ID: HRGMv2_2453_29_15
Type: TC
Location: 16004 - 17332 (+)
Gene ID: HRGMv2_2453_29_16
Type: TF
Location: 17495 - 18388 (+)
Gene ID: HRGMv2_2453_29_17
Type: TC
Location: 18586 - 20475 (+)
Gene ID: HRGMv2_2453_29_18
Type: CAZyme
Location: 20480 - 21877 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2453_29_7 vegan > omnivore 2.23249 0.00224
HRGMv2_2453_29_8 vegan > omnivore 4.87079 0.00224

🧭 Explore Read Mapping of CGC

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