dbCAN HGM

Cluster: HRGMv2_2453_CGC4

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2453_2	HRGMv2_2453_2_150	154818	157034	+	8.A.43.1.1
TC	HRGMv2_2453_2	HRGMv2_2453_2_151	157100	158626	+	8.A.43.1.1
TC	HRGMv2_2453_2	HRGMv2_2453_2_152	158629	159495	+	3.A.1.14.10
TC	HRGMv2_2453_2	HRGMv2_2453_2_153	159467	160495	+	3.A.1.14.10
TC	HRGMv2_2453_2	HRGMv2_2453_2_154	160496	161557	+	3.A.1.14.10
TC	HRGMv2_2453_2	HRGMv2_2453_2_155	161547	162356	+	3.A.1.14.10
pfam	HRGMv2_2453_2	HRGMv2_2453_2_156	162386	162793	+	DUF454
TC	HRGMv2_2453_2	HRGMv2_2453_2_157	162786	164549	+	3.A.1.106.12
TC	HRGMv2_2453_2	HRGMv2_2453_2_158	164551	166215	+	3.A.1.106.11
peptidase	HRGMv2_2453_2	HRGMv2_2453_2_159	166277	167503	-	M20.UPB
TF	HRGMv2_2453_2	HRGMv2_2453_2_160	167676	168116	+	MarR
TC	HRGMv2_2453_2	HRGMv2_2453_2_161	168373	169710	+	2.A.66.1.13
TC	HRGMv2_2453_2	HRGMv2_2453_2_162	170034	171587	+	2.A.14.1.2
CAZyme	HRGMv2_2453_2	HRGMv2_2453_2_163	171646	173073	+	AA4

Gene ID: HRGMv2_2453_2_150
Type: TC
Location: 154818 - 157034 (+)

Gene ID: HRGMv2_2453_2_151
Type: TC
Location: 157100 - 158626 (+)

Gene ID: HRGMv2_2453_2_152
Type: TC
Location: 158629 - 159495 (+)

Gene ID: HRGMv2_2453_2_153
Type: TC
Location: 159467 - 160495 (+)

Gene ID: HRGMv2_2453_2_154
Type: TC
Location: 160496 - 161557 (+)

Gene ID: HRGMv2_2453_2_155
Type: TC
Location: 161547 - 162356 (+)

Gene ID: HRGMv2_2453_2_156
Type: pfam
Location: 162386 - 162793 (+)

Gene ID: HRGMv2_2453_2_157
Type: TC
Location: 162786 - 164549 (+)

Gene ID: HRGMv2_2453_2_158
Type: TC
Location: 164551 - 166215 (+)

Gene ID: HRGMv2_2453_2_159
Type: peptidase
Location: 166277 - 167503 (-)

Gene ID: HRGMv2_2453_2_160
Type: TF
Location: 167676 - 168116 (+)

Gene ID: HRGMv2_2453_2_161
Type: TC
Location: 168373 - 169710 (+)

Gene ID: HRGMv2_2453_2_162
Type: TC
Location: 170034 - 171587 (+)

Gene ID: HRGMv2_2453_2_163
Type: CAZyme
Location: 171646 - 173073 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2453_2_153	vegan > omnivore	1.49387	0.00224
HRGMv2_2453_2_154	vegan > omnivore	1.72094	0.00224
HRGMv2_2453_2_157	vegan > omnivore	1.01836	0.00224
HRGMv2_2453_2_158	vegan > omnivore	1.18257	0.00224
HRGMv2_2453_2_159	vegan > omnivore	1.24609	0.00224

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2453_2_160	vegan > omnivore	1.58051	0.00646