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Cluster: HRGMv2_2453_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2453_24 HRGMv2_2453_24_10 10631 11614 + 4.A.6.1.15
TC HRGMv2_2453_24 HRGMv2_2453_24_11 11648 12445 + 4.A.6.1.15
TC HRGMv2_2453_24 HRGMv2_2453_24_12 12466 13380 + 4.A.6.1.15
pfam HRGMv2_2453_24 HRGMv2_2453_24_13 13542 13928 + DUF956
pfam HRGMv2_2453_24 HRGMv2_2453_24_14 13969 14904 + PMI_typeI_cat | MPI_cupin_dom
TC HRGMv2_2453_24 HRGMv2_2453_24_15 14943 17033 + 4.A.1.1.9
TC HRGMv2_2453_24 HRGMv2_2453_24_16 17199 18080 + 2.A.7.3.52
pfam HRGMv2_2453_24 HRGMv2_2453_24_17 18284 19123 + PRD | PRD | CAT_RBD
TC HRGMv2_2453_24 HRGMv2_2453_24_18 19404 21305 + 4.A.1.2.2
CAZyme HRGMv2_2453_24 HRGMv2_2453_24_19 21345 22787 + GH1
Gene ID: HRGMv2_2453_24_10
Type: TC
Location: 10631 - 11614 (+)
Gene ID: HRGMv2_2453_24_11
Type: TC
Location: 11648 - 12445 (+)
Gene ID: HRGMv2_2453_24_12
Type: TC
Location: 12466 - 13380 (+)
Gene ID: HRGMv2_2453_24_13
Type: pfam
Location: 13542 - 13928 (+)
Gene ID: HRGMv2_2453_24_14
Type: pfam
Location: 13969 - 14904 (+)
Gene ID: HRGMv2_2453_24_15
Type: TC
Location: 14943 - 17033 (+)
Gene ID: HRGMv2_2453_24_16
Type: TC
Location: 17199 - 18080 (+)
Gene ID: HRGMv2_2453_24_17
Type: pfam
Location: 18284 - 19123 (+)
Gene ID: HRGMv2_2453_24_18
Type: TC
Location: 19404 - 21305 (+)
Gene ID: HRGMv2_2453_24_19
Type: CAZyme
Location: 21345 - 22787 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2453_24_16 vegan > omnivore 1.38521 0.00224

🧭 Explore Read Mapping of CGC

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