dbCAN HGM

Cluster: HRGMv2_2453_CGC21

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2453_9	HRGMv2_2453_9_59	58687	60027	-	9.B.34.1.2
TC	HRGMv2_2453_9	HRGMv2_2453_9_60	60171	60692	-	4.A.2.1.2
TC	HRGMv2_2453_9	HRGMv2_2453_9_61	60829	62280	-	9.B.34.1.1
pfam	HRGMv2_2453_9	HRGMv2_2453_9_62	62292	63251	-	ApbA \| ApbA_C
TC	HRGMv2_2453_9	HRGMv2_2453_9_63	63371	63841	-	4.A.1.1.1
TF	HRGMv2_2453_9	HRGMv2_2453_9_64	63954	64748	+	HTH_6
TF	HRGMv2_2453_9	HRGMv2_2453_9_65	64723	65481	+	HTH_6
TC	HRGMv2_2453_9	HRGMv2_2453_9_66	65501	66973	-	4.A.1.1.3
CAZyme	HRGMv2_2453_9	HRGMv2_2453_9_67	67089	68414	-	GH4

Gene ID: HRGMv2_2453_9_59
Type: TC
Location: 58687 - 60027 (-)

Gene ID: HRGMv2_2453_9_60
Type: TC
Location: 60171 - 60692 (-)

Gene ID: HRGMv2_2453_9_61
Type: TC
Location: 60829 - 62280 (-)

Gene ID: HRGMv2_2453_9_62
Type: pfam
Location: 62292 - 63251 (-)

Gene ID: HRGMv2_2453_9_63
Type: TC
Location: 63371 - 63841 (-)

Gene ID: HRGMv2_2453_9_64
Type: TF
Location: 63954 - 64748 (+)

Gene ID: HRGMv2_2453_9_65
Type: TF
Location: 64723 - 65481 (+)

Gene ID: HRGMv2_2453_9_66
Type: TC
Location: 65501 - 66973 (-)

Gene ID: HRGMv2_2453_9_67
Type: CAZyme
Location: 67089 - 68414 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2453_9_63	vegan > omnivore	4.75387	0.00224
HRGMv2_2453_9_64	vegan > omnivore	6.33406	0.00224
HRGMv2_2453_9_65	vegan > omnivore	3.52544	0.00224
HRGMv2_2453_9_67	vegetarian > vegan	2.40866	0.01715

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2453_9_64	vegan > flexitarian	1.04361	0.00455