Cluster: HRGMv2_2453_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2453
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2453_4 | HRGMv2_2453_4_81 | 74953 | 76386 | - | 2.A.2.3.3 |
| pfam | HRGMv2_2453_4 | HRGMv2_2453_4_82 | 76402 | 77232 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2453_4 | HRGMv2_2453_4_83 | 77266 | 78270 | - | GH177 |
Gene ID: HRGMv2_2453_4_81
Type: TC
Location: 74953 - 76386 (-)
Type: TC
Location: 74953 - 76386 (-)
Gene ID: HRGMv2_2453_4_82
Type: pfam
Location: 76402 - 77232 (-)
Type: pfam
Location: 76402 - 77232 (-)
Gene ID: HRGMv2_2453_4_83
Type: CAZyme
Location: 77266 - 78270 (-)
Type: CAZyme
Location: 77266 - 78270 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2453_4_81 | vegan > omnivore | 18.01720 | 0.00224 |
| HRGMv2_2453_4_81 | vegetarian > omnivore | 16.47519 | 0.02254 |
| HRGMv2_2453_4_82 | vegan > omnivore | 3.17803 | 0.00224 |
| HRGMv2_2453_4_82 | vegetarian > omnivore | 3.51983 | 0.00581 |
| HRGMv2_2453_4_83 | vegan > omnivore | 1.68840 | 0.00224 |