Cluster: HRGMv2_2452_CGC5
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2452
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2452_4 | HRGMv2_2452_4_66 | 73178 | 74494 | - | GH13_20 |
| pfam | HRGMv2_2452_4 | HRGMv2_2452_4_67 | 74513 | 77722 | - | FtsX | FtsX |
| TC | HRGMv2_2452_4 | HRGMv2_2452_4_68 | 77732 | 78433 | - | 3.A.1.122.7 |
Gene ID: HRGMv2_2452_4_66
Type: CAZyme
Location: 73178 - 74494 (-)
Type: CAZyme
Location: 73178 - 74494 (-)
Gene ID: HRGMv2_2452_4_67
Type: pfam
Location: 74513 - 77722 (-)
Type: pfam
Location: 74513 - 77722 (-)
Gene ID: HRGMv2_2452_4_68
Type: TC
Location: 77732 - 78433 (-)
Type: TC
Location: 77732 - 78433 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2452_4_66 | vegan > omnivore | 1.54195 | 0.00454 |
| HRGMv2_2452_4_67 | vegan > omnivore | 1.50630 | 0.00454 |