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Cluster: HRGMv2_2452_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2452_3 HRGMv2_2452_3_103 112392 113258 + 8.A.5.1.4
TC HRGMv2_2452_3 HRGMv2_2452_3_104 113522 115387 + 4.A.1.2.11
CAZyme HRGMv2_2452_3 HRGMv2_2452_3_105 115406 116869 + GH1
TF HRGMv2_2452_3 HRGMv2_2452_3_106 117001 117885 + HTH_6
TC HRGMv2_2452_3 HRGMv2_2452_3_107 117983 119404 + 9.B.34.1.4
TC HRGMv2_2452_3 HRGMv2_2452_3_108 119773 121158 - 2.A.25.1.9
pfam HRGMv2_2452_3 HRGMv2_2452_3_109 121571 122233 + DUF6198
CAZyme HRGMv2_2452_3 HRGMv2_2452_3_110 122294 124432 + GH13_11
Gene ID: HRGMv2_2452_3_103
Type: TC
Location: 112392 - 113258 (+)
Gene ID: HRGMv2_2452_3_104
Type: TC
Location: 113522 - 115387 (+)
Gene ID: HRGMv2_2452_3_105
Type: CAZyme
Location: 115406 - 116869 (+)
Gene ID: HRGMv2_2452_3_106
Type: TF
Location: 117001 - 117885 (+)
Gene ID: HRGMv2_2452_3_107
Type: TC
Location: 117983 - 119404 (+)
Gene ID: HRGMv2_2452_3_108
Type: TC
Location: 119773 - 121158 (-)
Gene ID: HRGMv2_2452_3_109
Type: pfam
Location: 121571 - 122233 (+)
Gene ID: HRGMv2_2452_3_110
Type: CAZyme
Location: 122294 - 124432 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2452_3_107 vegan > omnivore 2.71752 0.00454

🧭 Explore Read Mapping of CGC

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