Cluster: HRGMv2_2452_CGC22
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2452
- CGC Family ID: CGCFAM_10090
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2452_20 | HRGMv2_2452_20_23 | 28120 | 29460 | - | 9.B.34.1.2 |
| TC | HRGMv2_2452_20 | HRGMv2_2452_20_24 | 29641 | 30162 | - | 4.A.2.1.2 |
| STP | HRGMv2_2452_20 | HRGMv2_2452_20_25 | 30352 | 32205 | - | GGDEF | dCache_1 |
| pfam | HRGMv2_2452_20 | HRGMv2_2452_20_26 | 32250 | 33209 | - | ApbA | ApbA_C |
| TC | HRGMv2_2452_20 | HRGMv2_2452_20_27 | 33336 | 33806 | - | 4.A.1.1.11 |
| TF | HRGMv2_2452_20 | HRGMv2_2452_20_28 | 33920 | 34714 | + | HTH_6 |
| TF | HRGMv2_2452_20 | HRGMv2_2452_20_29 | 34689 | 35447 | + | HTH_6 |
| TC | HRGMv2_2452_20 | HRGMv2_2452_20_30 | 35475 | 36989 | - | 4.A.1.1.3 |
| CAZyme | HRGMv2_2452_20 | HRGMv2_2452_20_31 | 37060 | 38385 | - | GH4 |
Gene ID: HRGMv2_2452_20_23
Type: TC
Location: 28120 - 29460 (-)
Type: TC
Location: 28120 - 29460 (-)
Gene ID: HRGMv2_2452_20_24
Type: TC
Location: 29641 - 30162 (-)
Type: TC
Location: 29641 - 30162 (-)
Gene ID: HRGMv2_2452_20_25
Type: STP
Location: 30352 - 32205 (-)
Type: STP
Location: 30352 - 32205 (-)
Gene ID: HRGMv2_2452_20_26
Type: pfam
Location: 32250 - 33209 (-)
Type: pfam
Location: 32250 - 33209 (-)
Gene ID: HRGMv2_2452_20_27
Type: TC
Location: 33336 - 33806 (-)
Type: TC
Location: 33336 - 33806 (-)
Gene ID: HRGMv2_2452_20_28
Type: TF
Location: 33920 - 34714 (+)
Type: TF
Location: 33920 - 34714 (+)
Gene ID: HRGMv2_2452_20_29
Type: TF
Location: 34689 - 35447 (+)
Type: TF
Location: 34689 - 35447 (+)
Gene ID: HRGMv2_2452_20_30
Type: TC
Location: 35475 - 36989 (-)
Type: TC
Location: 35475 - 36989 (-)
Gene ID: HRGMv2_2452_20_31
Type: CAZyme
Location: 37060 - 38385 (-)
Type: CAZyme
Location: 37060 - 38385 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2452_20_26 | vegan > omnivore | 1.64208 | 0.00454 |
| HRGMv2_2452_20_27 | vegan > omnivore | 4.14075 | 0.00454 |
| HRGMv2_2452_20_28 | vegan > omnivore | 5.02714 | 0.00454 |
| HRGMv2_2452_20_29 | vegan > omnivore | 3.76220 | 0.00454 |
| HRGMv2_2452_20_30 | vegan > omnivore | 1.16067 | 0.00454 |