Cluster: HRGMv2_2452_CGC21
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2452
- CGC Family ID: CGCFAM_02216
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_14 | 12045 | 12803 | + | 2.A.79.1.4 |
| pfam | HRGMv2_2452_19 | HRGMv2_2452_19_15 | 12804 | 13268 | + | ThrE | ThrE_2 |
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_16 | 13431 | 15158 | + | 2.A.58.2.2 |
| STP | HRGMv2_2452_19 | HRGMv2_2452_19_17 | 15155 | 16009 | + | LysR_substrate |
| peptidase | HRGMv2_2452_19 | HRGMv2_2452_19_18 | 16084 | 17784 | + | S08.UPA |
| CAZyme | HRGMv2_2452_19 | HRGMv2_2452_19_19 | 17895 | 20351 | + | GT35 |
| pfam | HRGMv2_2452_19 | HRGMv2_2452_19_20 | 20496 | 22283 | + | Lactamase_B |
| STP | HRGMv2_2452_19 | HRGMv2_2452_19_21 | 22388 | 23041 | + | TPR_2 |
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_22 | 23267 | 23698 | + | 4.A.6.1.16 |
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_23 | 23695 | 24183 | + | 4.A.6.1.16 |
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_24 | 24209 | 25027 | + | 4.A.6.1.3 |
| TC | HRGMv2_2452_19 | HRGMv2_2452_19_25 | 25048 | 25869 | + | 4.A.6.1.3 |
Gene ID: HRGMv2_2452_19_14
Type: TC
Location: 12045 - 12803 (+)
Type: TC
Location: 12045 - 12803 (+)
Gene ID: HRGMv2_2452_19_15
Type: pfam
Location: 12804 - 13268 (+)
Type: pfam
Location: 12804 - 13268 (+)
Gene ID: HRGMv2_2452_19_16
Type: TC
Location: 13431 - 15158 (+)
Type: TC
Location: 13431 - 15158 (+)
Gene ID: HRGMv2_2452_19_17
Type: STP
Location: 15155 - 16009 (+)
Type: STP
Location: 15155 - 16009 (+)
Gene ID: HRGMv2_2452_19_18
Type: peptidase
Location: 16084 - 17784 (+)
Type: peptidase
Location: 16084 - 17784 (+)
Gene ID: HRGMv2_2452_19_19
Type: CAZyme
Location: 17895 - 20351 (+)
Type: CAZyme
Location: 17895 - 20351 (+)
Gene ID: HRGMv2_2452_19_20
Type: pfam
Location: 20496 - 22283 (+)
Type: pfam
Location: 20496 - 22283 (+)
Gene ID: HRGMv2_2452_19_21
Type: STP
Location: 22388 - 23041 (+)
Type: STP
Location: 22388 - 23041 (+)
Gene ID: HRGMv2_2452_19_22
Type: TC
Location: 23267 - 23698 (+)
Type: TC
Location: 23267 - 23698 (+)
Gene ID: HRGMv2_2452_19_23
Type: TC
Location: 23695 - 24183 (+)
Type: TC
Location: 23695 - 24183 (+)
Gene ID: HRGMv2_2452_19_24
Type: TC
Location: 24209 - 25027 (+)
Type: TC
Location: 24209 - 25027 (+)
Gene ID: HRGMv2_2452_19_25
Type: TC
Location: 25048 - 25869 (+)
Type: TC
Location: 25048 - 25869 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2452_19_14 | vegan > omnivore | 1.48904 | 0.00454 |
| HRGMv2_2452_19_15 | vegan > omnivore | 1.15475 | 0.00454 |
| HRGMv2_2452_19_22 | vegan > omnivore | 1.00427 | 0.00454 |
| HRGMv2_2452_19_23 | vegan > omnivore | 1.31464 | 0.00454 |
| HRGMv2_2452_19_24 | vegan > omnivore | 2.15578 | 0.00454 |
| HRGMv2_2452_19_25 | vegan > omnivore | 2.39194 | 0.00454 |