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Cluster: HRGMv2_2452_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2452_2 HRGMv2_2452_2_106 122451 123311 + CE4
TF HRGMv2_2452_2 HRGMv2_2452_2_107 123521 124483 + HTH_AraC
TC HRGMv2_2452_2 HRGMv2_2452_2_108 124502 126289 + 3.A.1.21.1
TC HRGMv2_2452_2 HRGMv2_2452_2_109 126289 128025 + 3.A.1.106.2
CAZyme HRGMv2_2452_2 HRGMv2_2452_2_110 128136 129812 + GH13_31
pfam HRGMv2_2452_2 HRGMv2_2452_2_111 129922 131487 + PDDEXK_9 | AAA-ATPase_like
TF HRGMv2_2452_2 HRGMv2_2452_2_112 131550 132557 - HTH_AraC
TC HRGMv2_2452_2 HRGMv2_2452_2_113 132722 134584 + 4.A.1.2.11
CAZyme HRGMv2_2452_2 HRGMv2_2452_2_114 134589 136046 + GH1
TC HRGMv2_2452_2 HRGMv2_2452_2_115 136218 137555 + 2.A.38.4.1
TC HRGMv2_2452_2 HRGMv2_2452_2_116 137575 138222 + 2.A.38.4.4
Gene ID: HRGMv2_2452_2_106
Type: CAZyme
Location: 122451 - 123311 (+)
Gene ID: HRGMv2_2452_2_107
Type: TF
Location: 123521 - 124483 (+)
Gene ID: HRGMv2_2452_2_108
Type: TC
Location: 124502 - 126289 (+)
Gene ID: HRGMv2_2452_2_109
Type: TC
Location: 126289 - 128025 (+)
Gene ID: HRGMv2_2452_2_110
Type: CAZyme
Location: 128136 - 129812 (+)
Gene ID: HRGMv2_2452_2_111
Type: pfam
Location: 129922 - 131487 (+)
Gene ID: HRGMv2_2452_2_112
Type: TF
Location: 131550 - 132557 (-)
Gene ID: HRGMv2_2452_2_113
Type: TC
Location: 132722 - 134584 (+)
Gene ID: HRGMv2_2452_2_114
Type: CAZyme
Location: 134589 - 136046 (+)
Gene ID: HRGMv2_2452_2_115
Type: TC
Location: 136218 - 137555 (+)
Gene ID: HRGMv2_2452_2_116
Type: TC
Location: 137575 - 138222 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerostipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2452_2_107 vegan > omnivore 1.49119 0.00454
HRGMv2_2452_2_108 vegan > omnivore 1.32269 0.00454
HRGMv2_2452_2_110 vegetarian > omnivore 1.26549 0.01315

🧭 Explore Read Mapping of CGC

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