Cluster: HRGMv2_2452_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2452
- CGC Family ID: CGCFAM_10089
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2452_13 | HRGMv2_2452_13_19 | 18562 | 19989 | - | AA4 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_20 | 20048 | 21601 | - | 2.A.14.1.2 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_21 | 21924 | 23273 | - | 2.A.66.1.13 |
| TF | HRGMv2_2452_13 | HRGMv2_2452_13_22 | 23408 | 23848 | - | MarR |
| peptidase | HRGMv2_2452_13 | HRGMv2_2452_13_23 | 24022 | 25248 | + | M20.UPB |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_24 | 25310 | 26974 | - | 3.A.1.106.11 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_25 | 26976 | 28739 | - | 3.A.1.106.12 |
| pfam | HRGMv2_2452_13 | HRGMv2_2452_13_26 | 28732 | 29139 | - | DUF454 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_27 | 29168 | 29977 | - | 3.A.1.14.10 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_28 | 29967 | 31028 | - | 3.A.1.14.10 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_29 | 31029 | 32057 | - | 3.A.1.14.10 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_30 | 32029 | 32925 | - | 3.A.1.14.10 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_31 | 32928 | 34448 | - | 8.A.43.1.1 |
| TC | HRGMv2_2452_13 | HRGMv2_2452_13_32 | 34514 | 36730 | - | 8.A.43.1.1 |
Gene ID: HRGMv2_2452_13_19
Type: CAZyme
Location: 18562 - 19989 (-)
Type: CAZyme
Location: 18562 - 19989 (-)
Gene ID: HRGMv2_2452_13_20
Type: TC
Location: 20048 - 21601 (-)
Type: TC
Location: 20048 - 21601 (-)
Gene ID: HRGMv2_2452_13_21
Type: TC
Location: 21924 - 23273 (-)
Type: TC
Location: 21924 - 23273 (-)
Gene ID: HRGMv2_2452_13_22
Type: TF
Location: 23408 - 23848 (-)
Type: TF
Location: 23408 - 23848 (-)
Gene ID: HRGMv2_2452_13_23
Type: peptidase
Location: 24022 - 25248 (+)
Type: peptidase
Location: 24022 - 25248 (+)
Gene ID: HRGMv2_2452_13_24
Type: TC
Location: 25310 - 26974 (-)
Type: TC
Location: 25310 - 26974 (-)
Gene ID: HRGMv2_2452_13_25
Type: TC
Location: 26976 - 28739 (-)
Type: TC
Location: 26976 - 28739 (-)
Gene ID: HRGMv2_2452_13_26
Type: pfam
Location: 28732 - 29139 (-)
Type: pfam
Location: 28732 - 29139 (-)
Gene ID: HRGMv2_2452_13_27
Type: TC
Location: 29168 - 29977 (-)
Type: TC
Location: 29168 - 29977 (-)
Gene ID: HRGMv2_2452_13_28
Type: TC
Location: 29967 - 31028 (-)
Type: TC
Location: 29967 - 31028 (-)
Gene ID: HRGMv2_2452_13_29
Type: TC
Location: 31029 - 32057 (-)
Type: TC
Location: 31029 - 32057 (-)
Gene ID: HRGMv2_2452_13_30
Type: TC
Location: 32029 - 32925 (-)
Type: TC
Location: 32029 - 32925 (-)
Gene ID: HRGMv2_2452_13_31
Type: TC
Location: 32928 - 34448 (-)
Type: TC
Location: 32928 - 34448 (-)
Gene ID: HRGMv2_2452_13_32
Type: TC
Location: 34514 - 36730 (-)
Type: TC
Location: 34514 - 36730 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2452_13_23 | vegan > omnivore | 1.92085 | 0.00454 |
| HRGMv2_2452_13_25 | vegan > omnivore | 1.69228 | 0.00454 |
| HRGMv2_2452_13_26 | vegan > omnivore | 1.32021 | 0.00454 |
| HRGMv2_2452_13_28 | vegan > omnivore | 1.09201 | 0.00454 |
| HRGMv2_2452_13_29 | vegan > omnivore | 1.05102 | 0.00454 |