Cluster: HRGMv2_2452_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2452
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2452_8 | HRGMv2_2452_8_53 | 61339 | 62100 | - | 3.A.1.3.10 |
| TC | HRGMv2_2452_8 | HRGMv2_2452_8_54 | 62113 | 62769 | - | 3.A.1.3.14 |
| TC | HRGMv2_2452_8 | HRGMv2_2452_8_55 | 62900 | 63706 | - | 3.A.1.3.27 |
| CAZyme | HRGMv2_2452_8 | HRGMv2_2452_8_56 | 63902 | 65236 | + | GH73 |
Gene ID: HRGMv2_2452_8_53
Type: TC
Location: 61339 - 62100 (-)
Type: TC
Location: 61339 - 62100 (-)
Gene ID: HRGMv2_2452_8_54
Type: TC
Location: 62113 - 62769 (-)
Type: TC
Location: 62113 - 62769 (-)
Gene ID: HRGMv2_2452_8_55
Type: TC
Location: 62900 - 63706 (-)
Type: TC
Location: 62900 - 63706 (-)
Gene ID: HRGMv2_2452_8_56
Type: CAZyme
Location: 63902 - 65236 (+)
Type: CAZyme
Location: 63902 - 65236 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2452_8_54 | vegan > omnivore | 1.57928 | 0.00454 |
| HRGMv2_2452_8_55 | vegan > omnivore | 1.85194 | 0.00454 |