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Cluster: HRGMv2_2449_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2449_255 HRGMv2_2449_255_2 1721 2365 + 9.B.156.3.1
TC HRGMv2_2449_255 HRGMv2_2449_255_3 2362 2889 + 9.B.156.3.1
pfam HRGMv2_2449_255 HRGMv2_2449_255_4 2920 3660 - Acyltransferase
pfam HRGMv2_2449_255 HRGMv2_2449_255_5 3842 4249 + PrcB_C
CAZyme HRGMv2_2449_255 HRGMv2_2449_255_6 4345 5901 + CBM50
pfam HRGMv2_2449_255 HRGMv2_2449_255_7 6079 6957 + GHMP_kinases_N | GHMP_kinases_C
TF HRGMv2_2449_255 HRGMv2_2449_255_8 6954 7658 + GntR
TC HRGMv2_2449_255 HRGMv2_2449_255_9 7780 9276 + 9.A.11.1.2
Gene ID: HRGMv2_2449_255_2
Type: TC
Location: 1721 - 2365 (+)
Gene ID: HRGMv2_2449_255_3
Type: TC
Location: 2362 - 2889 (+)
Gene ID: HRGMv2_2449_255_4
Type: pfam
Location: 2920 - 3660 (-)
Gene ID: HRGMv2_2449_255_5
Type: pfam
Location: 3842 - 4249 (+)
Gene ID: HRGMv2_2449_255_6
Type: CAZyme
Location: 4345 - 5901 (+)
Gene ID: HRGMv2_2449_255_7
Type: pfam
Location: 6079 - 6957 (+)
Gene ID: HRGMv2_2449_255_8
Type: TF
Location: 6954 - 7658 (+)
Gene ID: HRGMv2_2449_255_9
Type: TC
Location: 7780 - 9276 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2449_255_8 vegan > omnivore 2.11823 0.00969
HRGMv2_2449_255_8 vegetarian > omnivore 1.70457 0.02104

🧭 Explore Read Mapping of CGC

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