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Cluster: HRGMv2_2449_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2449_120 HRGMv2_2449_120_25 26058 27968 - GH127
CAZyme HRGMv2_2449_120 HRGMv2_2449_120_26 27978 30266 - GH31_3
pfam HRGMv2_2449_120 HRGMv2_2449_120_27 30281 30940 - DUF624
CAZyme HRGMv2_2449_120 HRGMv2_2449_120_28 30964 32997 - GH31_5
TC HRGMv2_2449_120 HRGMv2_2449_120_29 33019 33855 - 3.A.1.1.6
TC HRGMv2_2449_120 HRGMv2_2449_120_30 33857 34744 - 3.A.1.1.41
STP HRGMv2_2449_120 HRGMv2_2449_120_31 34944 36194 - SBP_bac_1
TF HRGMv2_2449_120 HRGMv2_2449_120_32 36459 37202 - HTH_AraC | HTH_AraC
TC HRGMv2_2449_120 HRGMv2_2449_120_33 37248 39032 - 8.A.59.2.1
Gene ID: HRGMv2_2449_120_25
Type: CAZyme
Location: 26058 - 27968 (-)
Gene ID: HRGMv2_2449_120_26
Type: CAZyme
Location: 27978 - 30266 (-)
Gene ID: HRGMv2_2449_120_27
Type: pfam
Location: 30281 - 30940 (-)
Gene ID: HRGMv2_2449_120_28
Type: CAZyme
Location: 30964 - 32997 (-)
Gene ID: HRGMv2_2449_120_29
Type: TC
Location: 33019 - 33855 (-)
Gene ID: HRGMv2_2449_120_30
Type: TC
Location: 33857 - 34744 (-)
Gene ID: HRGMv2_2449_120_31
Type: STP
Location: 34944 - 36194 (-)
Gene ID: HRGMv2_2449_120_32
Type: TF
Location: 36459 - 37202 (-)
Gene ID: HRGMv2_2449_120_33
Type: TC
Location: 37248 - 39032 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2449_120_28 vegan > omnivore 1.42052 0.00969

🧭 Explore Read Mapping of CGC

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