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Cluster: HRGMv2_2449_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2449_88 HRGMv2_2449_88_3 3239 5107 + 9.B.34.1.2
CAZyme HRGMv2_2449_88 HRGMv2_2449_88_4 5104 7566 + GH39
CAZyme HRGMv2_2449_88 HRGMv2_2449_88_5 7806 10082 + GH3
pfam HRGMv2_2449_88 HRGMv2_2449_88_6 10145 10981 + PAP2 | PAP2_3
peptidase HRGMv2_2449_88 HRGMv2_2449_88_7 10974 12083 + S09.UPW
TC HRGMv2_2449_88 HRGMv2_2449_88_8 12476 13984 + 3.A.1.2.1
TC HRGMv2_2449_88 HRGMv2_2449_88_9 13977 14981 + 3.A.1.2.13
TC HRGMv2_2449_88 HRGMv2_2449_88_10 15053 16051 + 3.A.1.2.2
Gene ID: HRGMv2_2449_88_3
Type: TC
Location: 3239 - 5107 (+)
Gene ID: HRGMv2_2449_88_4
Type: CAZyme
Location: 5104 - 7566 (+)
Gene ID: HRGMv2_2449_88_5
Type: CAZyme
Location: 7806 - 10082 (+)
Gene ID: HRGMv2_2449_88_6
Type: pfam
Location: 10145 - 10981 (+)
Gene ID: HRGMv2_2449_88_7
Type: peptidase
Location: 10974 - 12083 (+)
Gene ID: HRGMv2_2449_88_8
Type: TC
Location: 12476 - 13984 (+)
Gene ID: HRGMv2_2449_88_9
Type: TC
Location: 13977 - 14981 (+)
Gene ID: HRGMv2_2449_88_10
Type: TC
Location: 15053 - 16051 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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