Cluster: HRGMv2_2449_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2449
- CGC Family ID: CGCFAM_05189
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_14 | 14832 | 16118 | + | 3.A.1.1.4 |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_15 | 16216 | 17115 | + | 3.A.1.1.4 |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_16 | 17108 | 17935 | + | 3.A.1.1.4 |
| CAZyme | HRGMv2_2449_3 | HRGMv2_2449_3_17 | 18003 | 21083 | + | GH2 |
| CAZyme | HRGMv2_2449_3 | HRGMv2_2449_3_18 | 21110 | 23137 | + | GH42 |
| TF | HRGMv2_2449_3 | HRGMv2_2449_3_19 | 23160 | 24050 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_20 | 24351 | 25616 | + | 3.A.1.1.26 |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_21 | 25651 | 26544 | + | 3.A.1.1.25 |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_22 | 26557 | 27381 | + | 3.A.1.1.36 |
| TC | HRGMv2_2449_3 | HRGMv2_2449_3_23 | 27490 | 28185 | + | 9.B.28.1.2 |
| CAZyme | HRGMv2_2449_3 | HRGMv2_2449_3_24 | 28215 | 30413 | + | GH36 |
| TF | HRGMv2_2449_3 | HRGMv2_2449_3_25 | 30477 | 31091 | - | 0042546 |
| pfam | HRGMv2_2449_3 | HRGMv2_2449_3_26 | 31231 | 33465 | + | UvrD-helicase | AAA_19 | UvrD_C | PcrA_UvrD_tudor |
| CAZyme | HRGMv2_2449_3 | HRGMv2_2449_3_27 | 33586 | 35814 | + | GH36 |
Gene ID: HRGMv2_2449_3_14
Type: TC
Location: 14832 - 16118 (+)
Type: TC
Location: 14832 - 16118 (+)
Gene ID: HRGMv2_2449_3_15
Type: TC
Location: 16216 - 17115 (+)
Type: TC
Location: 16216 - 17115 (+)
Gene ID: HRGMv2_2449_3_16
Type: TC
Location: 17108 - 17935 (+)
Type: TC
Location: 17108 - 17935 (+)
Gene ID: HRGMv2_2449_3_17
Type: CAZyme
Location: 18003 - 21083 (+)
Type: CAZyme
Location: 18003 - 21083 (+)
Gene ID: HRGMv2_2449_3_18
Type: CAZyme
Location: 21110 - 23137 (+)
Type: CAZyme
Location: 21110 - 23137 (+)
Gene ID: HRGMv2_2449_3_19
Type: TF
Location: 23160 - 24050 (-)
Type: TF
Location: 23160 - 24050 (-)
Gene ID: HRGMv2_2449_3_20
Type: TC
Location: 24351 - 25616 (+)
Type: TC
Location: 24351 - 25616 (+)
Gene ID: HRGMv2_2449_3_21
Type: TC
Location: 25651 - 26544 (+)
Type: TC
Location: 25651 - 26544 (+)
Gene ID: HRGMv2_2449_3_22
Type: TC
Location: 26557 - 27381 (+)
Type: TC
Location: 26557 - 27381 (+)
Gene ID: HRGMv2_2449_3_23
Type: TC
Location: 27490 - 28185 (+)
Type: TC
Location: 27490 - 28185 (+)
Gene ID: HRGMv2_2449_3_24
Type: CAZyme
Location: 28215 - 30413 (+)
Type: CAZyme
Location: 28215 - 30413 (+)
Gene ID: HRGMv2_2449_3_25
Type: TF
Location: 30477 - 31091 (-)
Type: TF
Location: 30477 - 31091 (-)
Gene ID: HRGMv2_2449_3_26
Type: pfam
Location: 31231 - 33465 (+)
Type: pfam
Location: 31231 - 33465 (+)
Gene ID: HRGMv2_2449_3_27
Type: CAZyme
Location: 33586 - 35814 (+)
Type: CAZyme
Location: 33586 - 35814 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Blautia_A
Species
Blautia_A sp019416265
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2449_3_14 | vegan > omnivore | 1.06606 | 0.00969 |
| HRGMv2_2449_3_15 | vegan > omnivore | 1.14800 | 0.00969 |
| HRGMv2_2449_3_20 | vegan > omnivore | 2.37097 | 0.00969 |
| HRGMv2_2449_3_21 | vegan > omnivore | 1.83713 | 0.00969 |
| HRGMv2_2449_3_22 | vegan > omnivore | 1.77834 | 0.00969 |
| HRGMv2_2449_3_25 | vegan > omnivore | 1.04283 | 0.00969 |